BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040849
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   166   1e-39
emb|CBI40590.3| unnamed protein product [Vitis vinifera]              166   1e-39
ref|XP_002523296.1| pentatricopeptide repeat-containing protein,...   141   5e-32
ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31

>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  166 bits (421), Expect = 1e-39
 Identities = 81/120 (67%), Positives = 93/120 (77%)
 Frame = -3

Query: 362 MNQLKQIHAQTLINGTDQYKFLISKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 183
           MN+LKQI A TL NG +  K LI  LL+IP+I YA K+FD IP+PT FLYNKLIQAYSSH
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 182 GPFTQCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYAL 3
           GP  QC  LY+QMCL+GC PN HSFTFLF+ACASL S QQG+M+HT F K GF  D +AL
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL 120


>emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  166 bits (421), Expect = 1e-39
 Identities = 81/120 (67%), Positives = 93/120 (77%)
 Frame = -3

Query: 362 MNQLKQIHAQTLINGTDQYKFLISKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 183
           MN+LKQI A TL NG +  K LI  LL+IP+I YA K+FD IP+PT FLYNKLIQAYSSH
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 182 GPFTQCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYAL 3
           GP  QC  LY+QMCL+GC PN HSFTFLF+ACASL S QQG+M+HT F K GF  D +AL
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL 120


>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 353

 Score =  141 bits (356), Expect = 5e-32
 Identities = 71/120 (59%), Positives = 79/120 (65%)
 Frame = -3

Query: 362 MNQLKQIHAQTLINGTDQYKFLISKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 183
           MNQLKQIHA TL NG D  K L  +L++IPN+ YA K+ D IP P  FLYNKLIQAYS  
Sbjct: 1   MNQLKQIHAYTLRNGIDYNKTLTERLIQIPNVPYAHKLIDLIPSPNVFLYNKLIQAYSFQ 60

Query: 182 GPFTQCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYAL 3
               QC  +YSQM  R C  N H+FTFLFAACAS  S    QM+HT F K GFE D  AL
Sbjct: 61  NQLHQCFSIYSQMRSRNCTGNQHTFTFLFAACASFFSPLHAQMLHTHFKKSGFESDVIAL 120


>ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  140 bits (353), Expect = 1e-31
 Identities = 68/120 (56%), Positives = 86/120 (71%)
 Frame = -3

Query: 362 MNQLKQIHAQTLINGTDQYKFLISKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 183
           MNQLKQIHA +L NG D  KFLI KLL++P++ YA  +FD IP+P+ +LYNK IQ +SS 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 182 GPFTQCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYAL 3
           G   +C  LY QMC +GC PN +SFTFLF ACASL +   GQM+H+ F K GF  D +A+
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAM 120


>ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  140 bits (353), Expect = 1e-31
 Identities = 68/120 (56%), Positives = 86/120 (71%)
 Frame = -3

Query: 362 MNQLKQIHAQTLINGTDQYKFLISKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 183
           MNQLKQIHA +L NG D  KFLI KLL++P++ YA  +FD IP+P+ +LYNK IQ +SS 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 182 GPFTQCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYAL 3
           G   +C  LY QMC +GC PN +SFTFLF ACASL +   GQM+H+ F K GF  D +A+
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAM 120