BLASTX nr result

ID: Coptis23_contig00040843 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040843
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAM11099.1| ABC protein [Coptis japonica]                          74   1e-11
ref|XP_002515184.1| multidrug resistance protein 1, 2, putative ...    57   2e-06

>dbj|BAM11099.1| ABC protein [Coptis japonica]
          Length = 1288

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = -1

Query: 262  SIAVIKNGVIIEKGRHEDLINIKNGVYSFLVAHQMSS 152
            SIAVIKNGVIIEKGRHEDL+NIKNGVYSFLVAHQMSS
Sbjct: 1252 SIAVIKNGVIIEKGRHEDLLNIKNGVYSFLVAHQMSS 1288


>ref|XP_002515184.1| multidrug resistance protein 1, 2, putative [Ricinus communis]
            gi|223545664|gb|EEF47168.1| multidrug resistance protein
            1, 2, putative [Ricinus communis]
          Length = 1301

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -1

Query: 259  IAVIKNGVIIEKGRHEDLINIKNGVYSFLVAHQMSS 152
            IAV+KNGVI+EKGRHE LINIK+GVY+ LVA  MS+
Sbjct: 1263 IAVVKNGVIVEKGRHETLINIKDGVYASLVALHMSA 1298


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