BLASTX nr result

ID: Coptis23_contig00040786 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040786
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520252.1| conserved hypothetical protein [Ricinus comm...    62   5e-08
emb|CBI19938.3| unnamed protein product [Vitis vinifera]               55   4e-06
ref|XP_002267135.1| PREDICTED: uncharacterized protein LOC100243...    55   4e-06

>ref|XP_002520252.1| conserved hypothetical protein [Ricinus communis]
           gi|223540471|gb|EEF42038.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 332

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 42/104 (40%), Positives = 55/104 (52%)
 Frame = +1

Query: 100 ACLISLFEDICVDPALDKCTTLITETKRWXXXXXXXXXXXXXXXXXXSFCQLAVLDRSLG 279
           A ++S+ E+ C   A+ K   LI   K W                   F +L V  RSL 
Sbjct: 202 ASVVSVLEEACGVKAMIKSRQLI-RGKIWIAAIINFTLNLSLFIIQAVFERLVVHGRSLN 260

Query: 280 LVSRVSFGIICFLLLSKIILVGLVISQTITVYLVFKSHHDESIN 411
           +V+RVS+GIICFLLL K+ L GLVI   I  Y V KS+H E+I+
Sbjct: 261 MVNRVSYGIICFLLLFKLFLFGLVIHTVI--YFVCKSYHHENID 302


>emb|CBI19938.3| unnamed protein product [Vitis vinifera]
          Length = 292

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 30/57 (52%), Positives = 42/57 (73%)
 Frame = +1

Query: 241 SFCQLAVLDRSLGLVSRVSFGIICFLLLSKIILVGLVISQTITVYLVFKSHHDESIN 411
           +F +L V   SLG+ +RV +GI+CFLLL K+ L GLV+ QTI +Y V KS+H E+I+
Sbjct: 179 AFERLVVYGASLGMANRVGYGILCFLLLFKLFLFGLVL-QTI-IYFVCKSYHHENID 233


>ref|XP_002267135.1| PREDICTED: uncharacterized protein LOC100243726 [Vitis vinifera]
          Length = 332

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 30/57 (52%), Positives = 42/57 (73%)
 Frame = +1

Query: 241 SFCQLAVLDRSLGLVSRVSFGIICFLLLSKIILVGLVISQTITVYLVFKSHHDESIN 411
           +F +L V   SLG+ +RV +GI+CFLLL K+ L GLV+ QTI +Y V KS+H E+I+
Sbjct: 248 AFERLVVYGASLGMANRVGYGILCFLLLFKLFLFGLVL-QTI-IYFVCKSYHHENID 302


Top