BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040764
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    86   4e-15
ref|XP_002877605.1| pentatricopeptide repeat-containing protein ...    83   2e-14

>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 47/105 (44%), Positives = 70/105 (66%)
 Frame = -3

Query: 315 ETMKEFWGLVKRMSAEGCYIDDDTYSMLWHNLNKDELTSDANTLTQFYTKMAQESILDAS 136
           E+MK FW  ++ M   G Y+D++TY  +   L K +  +DA  LT FY +M Q++ +D+ 
Sbjct: 135 ESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADATGLTHFYNRMLQQNAMDSV 194

Query: 135 VKGVVDLVLGSDWNDDVKKKLGELDVKLSENFLFRIVTALRAHPL 1
           V+ VVD+VLGSDW++DV  KL EL + LS+NF+ R++  LR  PL
Sbjct: 195 VQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPL 239


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/105 (40%), Positives = 66/105 (62%)
 Frame = -3

Query: 315 ETMKEFWGLVKRMSAEGCYIDDDTYSMLWHNLNKDELTSDANTLTQFYTKMAQESILDAS 136
           E+MK+FW  +++M  +G  ID +TY  +     K ++ S+   LT FY +M QE+ +D  
Sbjct: 142 ESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMVQENAMDEV 201

Query: 135 VKGVVDLVLGSDWNDDVKKKLGELDVKLSENFLFRIVTALRAHPL 1
           VK VV+LV  S W+ +V+KKLGEL    S+NF+  ++  LR +PL
Sbjct: 202 VKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPL 246


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 38/109 (34%), Positives = 70/109 (64%)
 Frame = -3

Query: 327 LGCKETMKEFWGLVKRMSAEGCYIDDDTYSMLWHNLNKDELTSDANTLTQFYTKMAQESI 148
           L  K+TMK+FW  ++ M   G ++D++TY  +     ++++ SD+  LT FY +M +E+ 
Sbjct: 137 LAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMDSDSVALTHFYNRMLEENA 196

Query: 147 LDASVKGVVDLVLGSDWNDDVKKKLGELDVKLSENFLFRIVTALRAHPL 1
           + + V  VV ++  S+W D+V  +L +L+++LS+NF+ R++  LR  PL
Sbjct: 197 MQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPL 245


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 36/106 (33%), Positives = 69/106 (65%)
 Frame = -3

Query: 318 KETMKEFWGLVKRMSAEGCYIDDDTYSMLWHNLNKDELTSDANTLTQFYTKMAQESILDA 139
           K++MK FW  +++M  +G Y D++TY  +     K+ + SDA     F+ +M +E+ +D+
Sbjct: 139 KDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDSDAVAFKHFFDRMVEENAMDS 198

Query: 138 SVKGVVDLVLGSDWNDDVKKKLGELDVKLSENFLFRIVTALRAHPL 1
            VK VV +V  ++W+++V+K+L  + + L++NF+ R++  LR +PL
Sbjct: 199 VVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNYPL 244


>ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323443|gb|EFH53864.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 618

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 37/106 (34%), Positives = 65/106 (61%)
 Frame = -3

Query: 318 KETMKEFWGLVKRMSAEGCYIDDDTYSMLWHNLNKDELTSDANTLTQFYTKMAQESILDA 139
           + +MK FW  +  M   G Y+D+DTY  ++  LNK++  +DA  +  FY +M +E+ +  
Sbjct: 135 QRSMKRFWMTLSEMKQGGFYLDEDTYKTIYGELNKEKSKADAVAVAHFYERMLKENAMSV 194

Query: 138 SVKGVVDLVLGSDWNDDVKKKLGELDVKLSENFLFRIVTALRAHPL 1
               V  +V   DW+ +V+++L E+++ LS+NF+ R++  LR HPL
Sbjct: 195 VAGDVSAVVTKVDWSCEVERELQEMNLVLSDNFVIRVLKELREHPL 240