BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040747
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    95   5e-18
gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japo...    94   1e-17
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    93   3e-17
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    92   4e-17
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    91   1e-16

>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 43/94 (45%), Positives = 61/94 (64%)
 Frame = -1

Query: 284 FIDNIFEGLGFSNKWRSMVKLCISSVSYNVLLNGSPLSKIFPLRGIR*GDPISPYLFILA 105
           F++ +   LGF+NKW S +  C++SVSY+VL+NG P   I P RGIR GDP+SP LF+L 
Sbjct: 587 FLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLC 646

Query: 104 SEAISRIITYEESLGHVHGIVIKPKTPPITHLLY 3
           +EA+  I+   E  G + GI  + K   + HLL+
Sbjct: 647 TEALIHILNKAEQAGKITGIQFQDKKVSVNHLLF 680


>gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japonica Group]
          Length = 1170

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 42/94 (44%), Positives = 61/94 (64%)
 Frame = -1

Query: 284 FIDNIFEGLGFSNKWRSMVKLCISSVSYNVLLNGSPLSKIFPLRGIR*GDPISPYLFILA 105
           F+D + E +GF +KWRS +  C++SV YNV  NG  L    P RG+R GDP+SPYLF+L 
Sbjct: 453 FLDGVMERMGFCDKWRSWIMACVTSVQYNVRFNGHLLEPFSPTRGLRQGDPLSPYLFLLV 512

Query: 104 SEAISRIITYEESLGHVHGIVIKPKTPPITHLLY 3
           ++ +S II   ES G +  + +  + P I+HLL+
Sbjct: 513 ADGLSNIIKSNESEGLIQPLKVCRRAPGISHLLF 546


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 42/94 (44%), Positives = 61/94 (64%)
 Frame = -1

Query: 284  FIDNIFEGLGFSNKWRSMVKLCISSVSYNVLLNGSPLSKIFPLRGIR*GDPISPYLFILA 105
            F++ +   LGF+ +W   +  C++SVSY VL+NGSP  KIFP RGIR GDP+SPYLF+  
Sbjct: 950  FLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFC 1009

Query: 104  SEAISRIITYEESLGHVHGIVIKPKTPPITHLLY 3
            +E +S ++   E    +HG+ I      I+HLL+
Sbjct: 1010 AEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLF 1043


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1094

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 41/94 (43%), Positives = 60/94 (63%)
 Frame = -1

Query: 284 FIDNIFEGLGFSNKWRSMVKLCISSVSYNVLLNGSPLSKIFPLRGIR*GDPISPYLFILA 105
           F+  I   LGF++ W + +  C+SSVSY+VL+NG P   I P RG+R GDP+SP+LF+L 
Sbjct: 317 FLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLC 376

Query: 104 SEAISRIITYEESLGHVHGIVIKPKTPPITHLLY 3
           +EA+  I+   E +G + GI      P + HLL+
Sbjct: 377 TEALIHILNQAEKIGKISGIQFNGTGPSVNHLLF 410


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 40/94 (42%), Positives = 61/94 (64%)
 Frame = -1

Query: 284 FIDNIFEGLGFSNKWRSMVKLCISSVSYNVLLNGSPLSKIFPLRGIR*GDPISPYLFILA 105
           FI+ I + +GFS KW + +  CI++ +Y++L+NG P+ +I P RGIR GDPISPYL++L 
Sbjct: 43  FIEAIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLC 102

Query: 104 SEAISRIITYEESLGHVHGIVIKPKTPPITHLLY 3
           +E +S +I        +HG       P I+HLL+
Sbjct: 103 TEGLSALIQASIKAKQLHGFKASRNGPAISHLLF 136