BLASTX nr result
ID: Coptis23_contig00040724
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00040724
(284 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 136 2e-30
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,... 135 3e-30
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 128 5e-28
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 127 7e-28
ref|XP_002871218.1| pentatricopeptide repeat-containing protein ... 118 4e-25
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 136 bits (343), Expect = 2e-30
Identities = 63/94 (67%), Positives = 76/94 (80%)
Frame = -2
Query: 283 RLETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKE 104
+LE +GFVFD+E+VEKVLKRCFKV ALRFF W+K+ G HT TYNTM+YIAGEAKE
Sbjct: 161 KLEKSGFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKE 220
Query: 103 FNVIEELVEGMEKASCPKDIKTWTILISSYGKAK 2
F ++E+L+ ME+ C +DIKTWTILIS YGKAK
Sbjct: 221 FGLVEKLIGEMEEKGCKRDIKTWTILISHYGKAK 254
Score = 68.6 bits (166), Expect = 5e-10
Identities = 35/92 (38%), Positives = 50/92 (54%)
Frame = -2
Query: 280 LETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEF 101
LE F +++V ++L+ C G +AL FF W+ G+ HT ETYN I I+G +K F
Sbjct: 654 LEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKISGCSKNF 713
Query: 100 NVIEELVEGMEKASCPKDIKTWTILISSYGKA 5
+ L M + P TWTI+I YG+A
Sbjct: 714 RSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRA 745
>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1072
Score = 135 bits (340), Expect = 3e-30
Identities = 65/94 (69%), Positives = 74/94 (78%)
Frame = -2
Query: 283 RLETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKE 104
RLE GF F+ EIVEKVLKRCFKV A RFF W+K GF HT +TY TM+YIAGEAKE
Sbjct: 166 RLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKE 225
Query: 103 FNVIEELVEGMEKASCPKDIKTWTILISSYGKAK 2
F V+++LVE MEK SC KDIKTW+ILIS +GKAK
Sbjct: 226 FKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAK 259
Score = 68.9 bits (167), Expect = 4e-10
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = -2
Query: 280 LETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEF 101
LE F +V ++L C G++AL+FF WL + G+ HT+ETYN + I+G K+F
Sbjct: 676 LEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWLGVQTGYCHTKETYNMAMKISGREKDF 735
Query: 100 NVIEELVEGMEKASCPKDIKTWTILISSYGK 8
+ L M + C TW I+I YG+
Sbjct: 736 KHMRSLFYEMRRKGCLITPDTWAIMIMQYGR 766
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 128 bits (321), Expect = 5e-28
Identities = 60/94 (63%), Positives = 73/94 (77%)
Frame = -2
Query: 283 RLETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKE 104
RL+ GF + EIVEKVLKRC+KV A RFF W+K + GF HT +TYNTM+Y AGEA+E
Sbjct: 160 RLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEARE 219
Query: 103 FNVIEELVEGMEKASCPKDIKTWTILISSYGKAK 2
F+V++ L+E MEK SC +DIKTWTILI YGKAK
Sbjct: 220 FSVVDVLLEEMEKYSCERDIKTWTILIQQYGKAK 253
Score = 62.4 bits (150), Expect = 4e-08
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -2
Query: 280 LETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEF 101
LE F E+V + L+ C G++AL FF W+ + GF T ETYN + ++G K+F
Sbjct: 653 LEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDF 712
Query: 100 NVIEELVEGMEKASCPKDIKTWTILISSYGK 8
+ L M + TW I+I YG+
Sbjct: 713 KHMRSLFYEMRRRGFLIPPDTWAIMIMQYGR 743
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 127 bits (320), Expect = 7e-28
Identities = 60/94 (63%), Positives = 73/94 (77%)
Frame = -2
Query: 283 RLETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKE 104
RL+ GF + EIVEKVLKRC+KV A RFF W+K + GF HT +TYNTM+Y AGEA+E
Sbjct: 160 RLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEARE 219
Query: 103 FNVIEELVEGMEKASCPKDIKTWTILISSYGKAK 2
F+V++ L+E MEK SC +DIKTWTILI YGKAK
Sbjct: 220 FSVVDVLLEEMEKYSCERDIKTWTILIRQYGKAK 253
Score = 62.4 bits (150), Expect = 4e-08
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -2
Query: 280 LETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEF 101
LE F E+V + L+ C G++AL FF W+ + GF T ETYN + ++G K+F
Sbjct: 653 LEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDF 712
Query: 100 NVIEELVEGMEKASCPKDIKTWTILISSYGK 8
+ L M + TW I+I YG+
Sbjct: 713 KHMRSLFYEMRRRGFLIPPDTWAIMIMQYGR 743
>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297317055|gb|EFH47477.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1029
Score = 118 bits (296), Expect = 4e-25
Identities = 57/94 (60%), Positives = 70/94 (74%)
Frame = -2
Query: 283 RLETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKE 104
RLE F F+ EIVE VLKRCFKV A+RFF W+K + GF H YNTM+ IAGEA+
Sbjct: 144 RLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAGEARN 203
Query: 103 FNVIEELVEGMEKASCPKDIKTWTILISSYGKAK 2
++++ELV+ MEK +C KDI+TWTILIS YGKAK
Sbjct: 204 LDMVDELVKEMEKHACDKDIRTWTILISVYGKAK 237
Score = 64.3 bits (155), Expect = 1e-08
Identities = 32/91 (35%), Positives = 46/91 (50%)
Frame = -2
Query: 280 LETAGFVFDAEIVEKVLKRCFKVGDSALRFFKWLKYEKGFRHTRETYNTMIYIAGEAKEF 101
LE F E+V +VL+ G++ LRFF W+ G++H E YN I +AG K+F
Sbjct: 633 LEKLTVQFTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDF 692
Query: 100 NVIEELVEGMEKASCPKDIKTWTILISSYGK 8
+ L M + C TW I+I YG+
Sbjct: 693 KQMRSLFYEMRRQGCLITQDTWAIMIMQYGR 723