BLASTX nr result

ID: Coptis23_contig00040675 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040675
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284680.1| PREDICTED: uncharacterized protein LOC100245...    66   3e-09
ref|XP_002302211.1| predicted protein [Populus trichocarpa] gi|1...    58   9e-07
ref|XP_002520281.1| conserved hypothetical protein [Ricinus comm...    56   4e-06

>ref|XP_002284680.1| PREDICTED: uncharacterized protein LOC100245343 [Vitis vinifera]
           gi|302141748|emb|CBI18951.3| unnamed protein product
           [Vitis vinifera]
          Length = 301

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
 Frame = -1

Query: 343 VKSVTVKLPA------AAKSVVLPVKVKQQNDFVSSVPQKRARSPSPTLHRQNSFRREPE 182
           VKSV+ K  A      A  SVV+P K       V S PQKR R+ SP L RQ SFRREPE
Sbjct: 110 VKSVSGKFHAPKLVSPAKSSVVVPAKQLMPQRVVGSTPQKRVRASSPVLVRQKSFRREPE 169

Query: 181 RNHTGTNSFPQRNLGSS-SPSRRFYSD 104
           R ++   S P R L SS SPSRRF  D
Sbjct: 170 RPNS-AYSLPSRTLRSSPSPSRRFEGD 195


>ref|XP_002302211.1| predicted protein [Populus trichocarpa] gi|118483526|gb|ABK93661.1|
           unknown [Populus trichocarpa]
           gi|222843937|gb|EEE81484.1| predicted protein [Populus
           trichocarpa]
          Length = 309

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = -1

Query: 325 KLPAAAKSVVLPVKVKQQNDFVSSVPQKRARSPSPT-LHRQNSFRREPERNHTGTNSFPQ 149
           KL + AK VV P++        +S P KR RS SPT L RQ SFRREP+R +   +    
Sbjct: 132 KLGSPAKQVVAPMQQSIPQKVNTSTPHKRVRSNSPTALTRQKSFRREPDRFNPSYSLPIS 191

Query: 148 RNLGSSSPSRRFYSDT 101
           R L S SPSRRF  D+
Sbjct: 192 RTLRSPSPSRRFNGDS 207


>ref|XP_002520281.1| conserved hypothetical protein [Ricinus communis]
           gi|223540500|gb|EEF42067.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 321

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 36/71 (50%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = -1

Query: 310 AKSVVLPVKVKQQNDFVSSVPQKRARSPSPT-LHRQNSFRREPERNHTGTNSFPQRNLGS 134
           AK   LP+K        +S PQKR RS SPT ++RQ SFRRE ER     NS   R L S
Sbjct: 150 AKQASLPLKQSSPQKVNASTPQKRVRSNSPTPVNRQKSFRRESER--FTYNSLQCRTLRS 207

Query: 133 SSPSRRFYSDT 101
            SPSRRF  D+
Sbjct: 208 QSPSRRFDGDS 218


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