BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040660
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523781.1| pentatricopeptide repeat-containing protein,...    67   1e-09
emb|CBI28351.3| unnamed protein product [Vitis vinifera]               63   3e-08
ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi...    63   3e-08
ref|XP_002306232.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    58   7e-07

>ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536869|gb|EEF38507.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 661

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
 Frame = +2

Query: 131 KPDPINPDIITTVLLDFL-------NVDEPSNAPQ------LFDEIPQGNLPMCYYSLLL 271
           KP PI    + T    FL       N+ +P   P+      +FD  P+ ++  C + LL 
Sbjct: 13  KPQPIQ--FLKTTRTQFLQSHATAVNLGKPLQEPKCSIAQNVFDRSPKQDVVQCNH-LLF 69

Query: 272 EHSRNNLHHKVLDVFSKIHQSDGFINGSGLTCVLKACDWAFNHFNHSFVKQVHCLCLKSR 451
           ++SRNN HH+V+++F  IH+SD   +GS L+CVLKAC          F  QVH  C+KS 
Sbjct: 70  DYSRNNSHHEVVNLFVAIHRSDLLTDGSTLSCVLKACACL---SCKKFGIQVHDYCVKSG 126

Query: 452 HEADVSV 472
              D+SV
Sbjct: 127 FLEDISV 133


>emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 38/91 (41%), Positives = 52/91 (57%)
 Frame = +2

Query: 200 SNAPQLFDEIPQGNLPMCYYSLLLEHSRNNLHHKVLDVFSKIHQSDGFINGSGLTCVLKA 379
           S++ QLFDE PQ  L    + LL E SRN+ + + L++F  + +S    +GS L+CVLK 
Sbjct: 43  SHSQQLFDETPQQGLSRNNH-LLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKV 101

Query: 380 CDWAFNHFNHSFVKQVHCLCLKSRHEADVSV 472
           C   F+       KQVHC C+K     DVSV
Sbjct: 102 CGCLFDRI---VGKQVHCQCIKCGFVEDVSV 129


>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 38/91 (41%), Positives = 52/91 (57%)
 Frame = +2

Query: 200 SNAPQLFDEIPQGNLPMCYYSLLLEHSRNNLHHKVLDVFSKIHQSDGFINGSGLTCVLKA 379
           S++ QLFDE PQ  L    + LL E SRN+ + + L++F  + +S    +GS L+CVLK 
Sbjct: 43  SHSQQLFDETPQQGLSRNNH-LLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKV 101

Query: 380 CDWAFNHFNHSFVKQVHCLCLKSRHEADVSV 472
           C   F+       KQVHC C+K     DVSV
Sbjct: 102 CGCLFDRI---VGKQVHCQCIKCGFVEDVSV 129


>ref|XP_002306232.1| predicted protein [Populus trichocarpa] gi|222849196|gb|EEE86743.1|
           predicted protein [Populus trichocarpa]
          Length = 362

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/91 (45%), Positives = 55/91 (60%)
 Frame = +2

Query: 200 SNAPQLFDEIPQGNLPMCYYSLLLEHSRNNLHHKVLDVFSKIHQSDGFINGSGLTCVLKA 379
           S A  +F + PQ +L + Y  LL + SR N +  V+D+F  IH+S  FI+GS L+CVLKA
Sbjct: 52  SEAHPVFCKSPQQDL-VYYNHLLFQCSRENRNRGVVDLFVGIHRSGFFIDGSTLSCVLKA 110

Query: 380 CDWAFNHFNHSFVKQVHCLCLKSRHEADVSV 472
           C +    F+ +F  QVH   LKS    DVSV
Sbjct: 111 CSFL---FDRNFGIQVHNYSLKSGFLEDVSV 138


>ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +2

Query: 173 LDFLNV-DEPSNAPQLFDEIPQGNLPMCYYSLLLEHSRNNLHHKVLDVFSKIHQSDGFIN 349
           L F+++   P  A QLFDE P  ++   Y  LL + SRNN   + L +F  +H S   ++
Sbjct: 45  LPFISLPSRPRYAHQLFDETPLKDISH-YNRLLFDFSRNNHDREALHLFKDLHSSGLGVD 103

Query: 350 GSGLTCVLKACDWAFNHFNHSFVKQVHCLCLKSRHEADVSV 472
           G  L+C LK C   F+       +QVHC  LKS    DVSV
Sbjct: 104 GLTLSCALKVCGVLFDQV---VGRQVHCQSLKSGFLEDVSV 141