BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040658
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
emb|CBI31710.3| unnamed protein product [Vitis vinifera]              121   7e-26
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]   120   2e-25
ref|XP_003599019.1| Pentatricopeptide repeat-containing protein ...   112   4e-23
ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23

>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/88 (64%), Positives = 73/88 (82%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           DMYAKCG+++ SE++F+ M  +DTVSWN+ML+GYA+HG GD A+ALFS M ES  ++DSV
Sbjct: 676 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 85  SFVSVLSACRHGGLIEEGRNLFSLMSSR 2
           SFVSVLSACRH GL+EEGR +F  MS +
Sbjct: 736 SFVSVLSACRHAGLVEEGRKIFHSMSDK 763



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           D+Y+KCG V+++  VF +M  +D VSW +M+AGYA +G     + LF +M      ++ V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 85  SFVSVLSACRHGGLIEEGRNL 23
           S VS   A      +E+G+ +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351


>emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/88 (64%), Positives = 73/88 (82%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           DMYAKCG+++ SE++F+ M  +DTVSWN+ML+GYA+HG GD A+ALFS M ES  ++DSV
Sbjct: 320 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 379

Query: 85  SFVSVLSACRHGGLIEEGRNLFSLMSSR 2
           SFVSVLSACRH GL+EEGR +F  MS +
Sbjct: 380 SFVSVLSACRHAGLVEEGRKIFHSMSDK 407


>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  120 bits (300), Expect = 2e-25
 Identities = 57/88 (64%), Positives = 72/88 (81%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           DMYAKCG++  SE++F+ M  +DTVSWN+ML+GYA+HG GD A+ALFS M ES  ++DSV
Sbjct: 676 DMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 85  SFVSVLSACRHGGLIEEGRNLFSLMSSR 2
           SFVSVLSACRH GL+EEGR +F  MS +
Sbjct: 736 SFVSVLSACRHXGLVEEGRKIFHSMSDK 763



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           D+Y+KCG V+++  VF +M  +D VSW +M+AGYA +G     + LF +M      ++ V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 85  SFVSVLSACRHGGLIEEGRNL 23
           S VS   A      +E+G+ +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351


>ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355488067|gb|AES69270.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  112 bits (279), Expect = 4e-23
 Identities = 53/88 (60%), Positives = 69/88 (78%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           DMYAKCG++  SE+ FH M  +DT+SWN+ML+ YA+HG G+ AVALFS M ES   VDSV
Sbjct: 646 DMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSV 705

Query: 85  SFVSVLSACRHGGLIEEGRNLFSLMSSR 2
           S++SVLSACRH GLI+EG ++F+ M  +
Sbjct: 706 SYISVLSACRHSGLIQEGWDIFASMCEK 733



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 48/83 (57%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           DMY KCG V+ ++ VF RM +RD VSW +M+AGY  +G     + L  +M     +++ V
Sbjct: 241 DMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKV 300

Query: 85  SFVSVLSACRHGGLIEEGRNLFS 17
           + V+ L        +E+G+ +++
Sbjct: 301 AVVNALLVVAEMRDLEKGKEIYN 323


>ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|222850976|gb|EEE88523.1|
           predicted protein [Populus trichocarpa]
          Length = 535

 Score =  112 bits (279), Expect = 4e-23
 Identities = 54/88 (61%), Positives = 67/88 (76%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 86
           DMYAKCG ++ SE++FH M  +DTVSWN MLAGYA+HG G  A+ LFSRM +S   +DS 
Sbjct: 335 DMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSF 394

Query: 85  SFVSVLSACRHGGLIEEGRNLFSLMSSR 2
           SF++VLSACRH GLI EGR +F  MS +
Sbjct: 395 SFINVLSACRHAGLIGEGRKIFDSMSKQ 422



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = -1

Query: 265 DMYAKCGRVNLSEEVFHRM-CIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 89
           DMYAKCG ++ +E +FHR  C +D VSWN M+AGY   G    A + F +M     + + 
Sbjct: 233 DMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNI 292

Query: 88  VSFVSVLSACRHGGLIEEGRNL 23
           V+ V+VL A  H   +  G  L
Sbjct: 293 VTIVTVLPAVAHLSALRAGMTL 314