BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040594
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29835.3| unnamed protein product [Vitis vinifera]              197   1e-48
ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containi...   189   3e-46
ref|XP_002529506.1| pentatricopeptide repeat-containing protein,...   187   1e-45
ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containi...   181   5e-44
ref|XP_002308939.1| predicted protein [Populus trichocarpa] gi|2...   179   3e-43

>emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  197 bits (500), Expect = 1e-48
 Identities = 102/154 (66%), Positives = 119/154 (77%)
 Frame = +2

Query: 2    RVLLLAEFMREKAISFNDGTFFEIVSACSMLRNWRTTINVIKMIEPSFSVVSIGXXXXXX 181
            +VL+LAEFMREK I FN+ +FFE+VSACS+LR WR  I +IK++EPS SVVSIG      
Sbjct: 672  KVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLL 731

Query: 182  XXXGKSGKIETMMKLFFKMVASGAEINLGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQ 361
               GKSGKIETMMKLF+K+VASGAEIN  TYSILLKNLLAA  WRKYIEVL WMEEAGLQ
Sbjct: 732  HFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQ 791

Query: 362  PTLEMYQNISAIAWKCGDTASVASIHERIESVKR 463
            P++ MY++IS+ A         A I ERIES+KR
Sbjct: 792  PSVGMYRSISSFAQNRSGAEYAAVIQERIESLKR 825


>ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like
            [Vitis vinifera]
          Length = 848

 Score =  189 bits (480), Expect = 3e-46
 Identities = 98/149 (65%), Positives = 114/149 (76%)
 Frame = +2

Query: 2    RVLLLAEFMREKAISFNDGTFFEIVSACSMLRNWRTTINVIKMIEPSFSVVSIGXXXXXX 181
            +VL+LAEFMREK I FN+ +FFE+VSACS+LR WR  I +IK++EPS SVVSIG      
Sbjct: 672  KVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLL 731

Query: 182  XXXGKSGKIETMMKLFFKMVASGAEINLGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQ 361
               GKSGKIETMMKLF+K+VASGAEIN  TYSILLKNLLAA  WRKYIEVL WMEEAGLQ
Sbjct: 732  HFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQ 791

Query: 362  PTLEMYQNISAIAWKCGDTASVASIHERI 448
            P++ MY++IS+ A         A I ERI
Sbjct: 792  PSVGMYRSISSFAQNRSGAEYAAVIQERI 820


>ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223531022|gb|EEF32875.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 808

 Score =  187 bits (474), Expect = 1e-45
 Identities = 91/149 (61%), Positives = 115/149 (77%)
 Frame = +2

Query: 2    RVLLLAEFMREKAISFNDGTFFEIVSACSMLRNWRTTINVIKMIEPSFSVVSIGXXXXXX 181
            +VL+LAEFM+EK I F+D  FFE+VSACS+LR+WRT +N++K++EPSFSVVSIG      
Sbjct: 653  QVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLL 712

Query: 182  XXXGKSGKIETMMKLFFKMVASGAEINLGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQ 361
               G+SGKIE+MMKLF+K+ ASGAEIN  TYSI+LKNLLA   WRKYIEVL WME+AG+Q
Sbjct: 713  HVLGRSGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQ 772

Query: 362  PTLEMYQNISAIAWKCGDTASVASIHERI 448
            P++ MY +IS+   K G     A I ER+
Sbjct: 773  PSIGMYYDISSYVQKGGGAEYAAIIQERV 801


>ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like
            [Glycine max]
          Length = 832

 Score =  181 bits (460), Expect = 5e-44
 Identities = 89/149 (59%), Positives = 113/149 (75%)
 Frame = +2

Query: 2    RVLLLAEFMREKAISFNDGTFFEIVSACSMLRNWRTTINVIKMIEPSFSVVSIGXXXXXX 181
            RVL LAE MREK I F+D  FFE+VSACS+L++WRT +++IK IEPS  V+S G      
Sbjct: 661  RVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFL 720

Query: 182  XXXGKSGKIETMMKLFFKMVASGAEINLGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQ 361
               GKSGKIETM+KLFFKM+ASGA++NL TYSILLKNLL++  WRKY+EVL WME+AG+ 
Sbjct: 721  HSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIH 780

Query: 362  PTLEMYQNISAIAWKCGDTASVASIHERI 448
            P+ EMY +IS+ + KC    + A I ER+
Sbjct: 781  PSKEMYHDISSFSQKCCGNENAAVIRERL 809


>ref|XP_002308939.1| predicted protein [Populus trichocarpa] gi|222854915|gb|EEE92462.1|
            predicted protein [Populus trichocarpa]
          Length = 786

 Score =  179 bits (454), Expect = 3e-43
 Identities = 94/149 (63%), Positives = 113/149 (75%)
 Frame = +2

Query: 2    RVLLLAEFMREKAISFNDGTFFEIVSACSMLRNWRTTINVIKMIEPSFSVVSIGXXXXXX 181
            +VL+LAEFMREK I  +D  FFE+VSACS+LR+WRTTI +IK++E SFSVVSIG      
Sbjct: 637  KVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGLLNQLL 696

Query: 182  XXXGKSGKIETMMKLFFKMVASGAEINLGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQ 361
               GKSGKIE+MMKLF+K++ SGAEIN  TYSILLKNLLA   WRKYIEVL WMEEA +Q
Sbjct: 697  HLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWMEEARVQ 756

Query: 362  PTLEMYQNISAIAWKCGDTASVASIHERI 448
            P+  MY +I + A K G T S + I ER+
Sbjct: 757  PSNGMYFDIISFAQKSGATYS-SIIQERV 784