BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040548
         (764 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' part...   129   7e-28
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                127   2e-27
emb|CAN61804.1| hypothetical protein VITISV_044085 [Vitis vinifera]   127   3e-27
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   127   3e-27
emb|CAN78785.1| hypothetical protein VITISV_006286 [Vitis vinifera]   127   3e-27

>gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' partial [Arabidopsis thaliana]
          Length = 177

 Score =  129 bits (324), Expect = 7e-28
 Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
 Frame = +2

Query: 8   WPNQLENILWAHRTTARSSTGESPFSLCYGTEAVIPTELTVTTTR--SKLVESGQNDSIL 181
           W ++L+ +LWA+RTT+R STGE+PFSL YG EAV+P +L V   R     +   +N ++L
Sbjct: 15  WYDELQPVLWAYRTTSRRSTGETPFSLVYGMEAVVPAKLNVPGLRRTEAPLNEDENSAML 74

Query: 182 AREVALLEERRDLAAIRVASYS------YNKRVNPRSFQPGDLVLKKTQDD------SKL 325
              +  + ERRD A IR+ +Y       YN ++N R F  GD VLK+  D+       KL
Sbjct: 75  DDSLDTINERRDQALIRIQNYQQAAARYYNSKINSRPFFMGDYVLKRVFDNKKEEGAGKL 134

Query: 326 APTWEGPYTVERVVGNGAYWIKTQEGKLLPRPWNTYLLKKFY 451
              WEGPY V  VV NG + +K  E + + RPWN   LKKFY
Sbjct: 135 GINWEGPYIVTEVVRNGVFGLKDLEDRPVKRPWNMVNLKKFY 176


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  127 bits (320), Expect = 2e-27
 Identities = 65/161 (40%), Positives = 97/161 (60%), Gaps = 12/161 (7%)
 Frame = +2

Query: 5    QWPNQLENILWAHRTTARSSTGESPFSLCYGTEAVIPTELTVTTTRSKLVESGQNDSILA 184
            +W  +L ++LWA+RTT R STGE+PFS+ YG EAVIP EL   T +     +  N  +L 
Sbjct: 945  RWVEELPHVLWAYRTTPRRSTGETPFSMTYGMEAVIPLELGFPTLKFDQYNNVTNHDMLH 1004

Query: 185  REVALLEERRDLAAIRVASY------SYNKRVNPRSFQPGDLVLKKTQDDS------KLA 328
              +  +EERR++A++++ SY      +Y+K V  R   PGDLVL+K    +      KL 
Sbjct: 1005 DSLNTIEERREVASVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLG 1064

Query: 329  PTWEGPYTVERVVGNGAYWIKTQEGKLLPRPWNTYLLKKFY 451
              WEGPY +  V G GAY ++  +G+++ RPWN   L+++Y
Sbjct: 1065 TNWEGPYRITSVAGIGAYRLEDLDGRVVHRPWNVNNLRRYY 1105


>emb|CAN61804.1| hypothetical protein VITISV_044085 [Vitis vinifera]
          Length = 1028

 Score =  127 bits (319), Expect = 3e-27
 Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 12/162 (7%)
 Frame = +2

Query: 5    QWPNQLENILWAHRTTARSSTGESPFSLCYGTEAVIPTELTVTTTRSKLVESGQNDSILA 184
            +W  +L  +LWA+RTT    TG +PF+L YG +AVIPTE+ + T R+   +    D+ L 
Sbjct: 867  RWVEELPGVLWAYRTTPGRPTGNTPFALTYGMDAVIPTEIGLPTIRTDAAKQKDADTELG 926

Query: 185  REVALLEERRDLAAIRVASYS------YNKRVNPRSFQPGDLVLKKTQDDS------KLA 328
            R +   +E R+ A+IR+A Y       YN++V PR+F+ G LVL+K  +++      K  
Sbjct: 927  RNLDWADEVRESASIRMADYQQRASAHYNRKVRPRNFKNGTLVLRKVFENTAEVGAGKFQ 986

Query: 329  PTWEGPYTVERVVGNGAYWIKTQEGKLLPRPWNTYLLKKFYQ 454
              WEGPY V +   NGAY ++  +G  L RPWN + LK++YQ
Sbjct: 987  ANWEGPYIVSKANENGAYHLQKLDGTPLLRPWNVFNLKQYYQ 1028


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  127 bits (319), Expect = 3e-27
 Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
 Frame = +2

Query: 8    WPNQLENILWAHRTTARSSTGESPFSLCYGTEAVIPTELTVTTTRSKLV--ESGQNDSIL 181
            W ++L+ +LW++RTT R ST  +PFSL YG EA+ P E  + T R  ++  +   ND +L
Sbjct: 1625 WADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQML 1684

Query: 182  AREVALLEERRDLAAIRVASYS------YNKRVNPRSFQPGDLVLKKT------QDDSKL 325
               +  LEE+RD A +R+ +Y       YNK+V  R F  GDLVL+K       QD  KL
Sbjct: 1685 LDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKL 1744

Query: 326  APTWEGPYTVERVVGNGAYWIKTQEGKLLPRPWNTYLLKKFY 451
               WEGPY + +VV  G Y + T +G  +PR WN+  LK++Y
Sbjct: 1745 GAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786


>emb|CAN78785.1| hypothetical protein VITISV_006286 [Vitis vinifera]
          Length = 978

 Score =  127 bits (318), Expect = 3e-27
 Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 12/162 (7%)
 Frame = +2

Query: 5    QWPNQLENILWAHRTTARSSTGESPFSLCYGTEAVIPTELTVTTTRSKLVESGQNDSILA 184
            +W  +L  +LWA+RTT    TG +PF+L YG + VIPTE+ + T R+   +    ++ L 
Sbjct: 817  KWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDVVIPTEIGLPTIRTDAAKQNDANTELG 876

Query: 185  REVALLEERRDLAAIRVASY------SYNKRVNPRSFQPGDLVLKKTQDDS------KLA 328
            R +   +E R+ AAIR+A Y      +YN++V PRSF+ G LVL+K  +++      K  
Sbjct: 877  RNLDWTDEVRESAAIRMADYQQRASANYNRKVKPRSFKNGTLVLRKVFENTTEIGAGKFQ 936

Query: 329  PTWEGPYTVERVVGNGAYWIKTQEGKLLPRPWNTYLLKKFYQ 454
              WEGPY V +   +GAY ++  +G LL RPWN   LK++YQ
Sbjct: 937  ANWEGPYIVXKASESGAYHLQNLDGTLLLRPWNVSNLKQYYQ 978