BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040530
         (632 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   230   1e-58
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...   194   1e-47
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...   190   2e-46
ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp....   152   4e-35
ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containi...   151   8e-35

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  230 bits (587), Expect = 1e-58
 Identities = 115/205 (56%), Positives = 149/205 (72%)
 Frame = -1

Query: 620 SLSSLHQTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQ 441
           SL    Q  ++LL+  SS+P+ LKQ+HALLLTTG+ +KN  IT+LLTSLTLLG M YARQ
Sbjct: 31  SLPITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQ 90

Query: 440 LFDEMHKPRSYLWTTLIRGYVKNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEE 261
           LFDEMHKPR +LW T+++GYVKN +   +V VY  M  +GVRPD FTFPFV+K C  L E
Sbjct: 91  LFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAE 150

Query: 260 ILVGEEVHVHVIKFGVELDVIVRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMST 81
           +  G  +H HV+K G+E    VRTELM  Y KFGE+  A++LF SMV RDLV W+AL++ 
Sbjct: 151 LWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAV 210

Query: 80  YAQYGYADKAIKVFRQMEVNGVKPD 6
             Q G++ KA++ FR+M + G+KPD
Sbjct: 211 CVQTGFSSKALQSFREMGMAGIKPD 235



 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 48/180 (26%), Positives = 88/180 (48%)
 Frame = -1

Query: 545 IHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKPRSYLWTTLIRGYVKNEL 366
           +H  ++  G+       T+L+      G +  A  LF  M +     W  LI   V+   
Sbjct: 157 MHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGF 216

Query: 365 FIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVHVHVIKFGVELDVIVRTE 186
              ++  +  M   G++PD  T    L  CG+L  +  GEE++    + G++ ++IV   
Sbjct: 217 SSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNA 276

Query: 185 LMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPD 6
            +   AK G++  A  LF+ M  R+++ WS ++  YA  G ++KA+ +F +M+  GV+P+
Sbjct: 277 RLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPN 336


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score =  194 bits (492), Expect = 1e-47
 Identities = 96/199 (48%), Positives = 137/199 (68%)
 Frame = -1

Query: 602 QTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMH 423
           Q  S LL+  SS P QLK+IHA++L TG   KN  +T+LL +L ++G M YARQ+FDEMH
Sbjct: 11  QMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMH 70

Query: 422 KPRSYLWTTLIRGYVKNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEE 243
           KPR +LW TL +GYV+N+L  +S+L+Y+ M  +GVRPD+FT+PFV+K    L +   G  
Sbjct: 71  KPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFA 130

Query: 242 VHVHVIKFGVELDVIVRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGY 63
           +H HV+K+G     IV TEL+  Y KFGE++SA++LFESM  +DLV W+A ++   Q G 
Sbjct: 131 LHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGN 190

Query: 62  ADKAIKVFRQMEVNGVKPD 6
           +  A++ F +M  + V+ D
Sbjct: 191 SAIALEYFNKMCADAVQFD 209



 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 46/180 (25%), Positives = 83/180 (46%)
 Frame = -1

Query: 545 IHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKPRSYLWTTLIRGYVKNEL 366
           +HA ++  G        T+L+      G +  A  LF+ M       W   +   V+   
Sbjct: 131 LHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGN 190

Query: 365 FIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVHVHVIKFGVELDVIVRTE 186
              ++  +  M    V+ D FT   +L  CG L  + +GEE++    K  ++ ++IV   
Sbjct: 191 SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENA 250

Query: 185 LMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPD 6
            +  + K G   +A  LFE M  R++V WS ++  YA  G + +A+ +F  M+  G++P+
Sbjct: 251 RLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPN 310


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score =  190 bits (482), Expect = 2e-46
 Identities = 97/199 (48%), Positives = 136/199 (68%)
 Frame = -1

Query: 602 QTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMH 423
           Q  S LL+  SS P QLK+IHA+++ TG   KN  +T+LL +L L+G M YARQ+FDEM 
Sbjct: 11  QMLSELLRASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMP 70

Query: 422 KPRSYLWTTLIRGYVKNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEE 243
           KPR +LW TL +GYV+N+L  +SVL+Y+ M  +GVRPD+FT+PFV+K    L  +  G  
Sbjct: 71  KPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVS 130

Query: 242 VHVHVIKFGVELDVIVRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGY 63
           +H HV+K G E   IV TEL+  Y KFGE++SA++LFESM  +DLV W+A ++   Q G 
Sbjct: 131 LHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGN 190

Query: 62  ADKAIKVFRQMEVNGVKPD 6
           +  A++ F +M  + V+ D
Sbjct: 191 SAIALEYFNKMCADAVQFD 209



 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 48/180 (26%), Positives = 83/180 (46%)
 Frame = -1

Query: 545 IHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKPRSYLWTTLIRGYVKNEL 366
           +HA +L  G        T+L+      G +  A  LF+ M       W   I   V+   
Sbjct: 131 LHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGN 190

Query: 365 FIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVHVHVIKFGVELDVIVRTE 186
              ++  +  M    V+ D FT   +L  CG L  + +GEE++    K  +E ++IV   
Sbjct: 191 SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENA 250

Query: 185 LMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPD 6
            +  + K G   +A  LF+ M  R++V WS ++  YA  G + +A+ +F  M+  G++P+
Sbjct: 251 RLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPN 310


>ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330765|gb|EFH61184.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  152 bits (385), Expect = 4e-35
 Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 3/207 (1%)
 Frame = -1

Query: 614 SSLHQ-TFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQL 438
           S +H  +F + L   S++  QL+QIHA LL  G+      ITKL+ + +  G + +ARQ+
Sbjct: 16  SGIHSDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQV 75

Query: 437 FDEMHKPRSYLWTTLIRGYVKNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEI 258
           FD++ +P+ + W  +IRGY +N  F D++L+Y  M    V PD FTFP +LK CG L  +
Sbjct: 76  FDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHL 135

Query: 257 LVGEEVHVHVIKFGVELDVIVRTELMSFYAKFGEVASADYLFES--MVNRDLVCWSALMS 84
            +G  VH  V + G E DV V+  L++ YAK   +  A  +FE   +  R +V W+A++S
Sbjct: 136 QMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVS 195

Query: 83  TYAQYGYADKAIKVFRQMEVNGVKPDC 3
            YAQ G   +A+++F QM    VKPDC
Sbjct: 196 AYAQNGEPVEALEIFSQMRKMDVKPDC 222



 Score =  102 bits (255), Expect = 4e-20
 Identities = 55/184 (29%), Positives = 94/184 (51%)
 Frame = -1

Query: 557 QLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKPRSYLWTTLIRGYV 378
           Q + IHA ++  G+  +   +  L T     G +  A+ LFD+M  P   LW  +I GY 
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 377 KNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVHVHVIKFGVELDVI 198
           KN    D++ ++  M+   VRPD  +    +  C  +  +     +  +V +     DV 
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVF 359

Query: 197 VRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNG 18
           + + L+  +AK G V  A  +F+  ++RD+V WSA++  Y  +G A +AI ++R ME +G
Sbjct: 360 ISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDG 419

Query: 17  VKPD 6
           V P+
Sbjct: 420 VHPN 423



 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 4/202 (1%)
 Frame = -1

Query: 599 TFSSLLK-CHSSNPNQLKQ-IHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEM 426
           TF  LLK C   +  Q+ + +HA +   G          L+        +  AR +F+ +
Sbjct: 121 TFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGL 180

Query: 425 HKPRSYL--WTTLIRGYVKNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILV 252
             P   +  WT ++  Y +N   ++++ ++  M K+ V+PD      VL     L+++  
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQ 240

Query: 251 GEEVHVHVIKFGVELDVIVRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQ 72
           G  +H  V+K G+E +  +   L + YAK G+VA+A  LF+ M + +L+ W+A++S YA+
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300

Query: 71  YGYADKAIKVFRQMEVNGVKPD 6
            G+A  AI +F +M    V+PD
Sbjct: 301 NGFAKDAIDLFHEMINKDVRPD 322


>ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed
           protein product [Vitis vinifera]
          Length = 742

 Score =  151 bits (382), Expect = 8e-35
 Identities = 78/197 (39%), Positives = 117/197 (59%)
 Frame = -1

Query: 596 FSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKP 417
           FSSLL  HS +   L QIHA L+ +G+      +TK + +   +G + YAR++FDE  +P
Sbjct: 74  FSSLLD-HSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEP 132

Query: 416 RSYLWTTLIRGYVKNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVH 237
             +LW  +IRGY  +  F D++ +Y  M   GV PD FT P VLK C  +  + VG+ VH
Sbjct: 133 SVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVH 192

Query: 236 VHVIKFGVELDVIVRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYAD 57
             + + G E DV V+  L++ YAK G V  A  +FE + +R++V W++++S Y Q G   
Sbjct: 193 GQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPM 252

Query: 56  KAIKVFRQMEVNGVKPD 6
           +A+++F QM    VKPD
Sbjct: 253 EALRIFGQMRQRNVKPD 269



 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 51/184 (27%), Positives = 89/184 (48%)
 Frame = -1

Query: 557 QLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKPRSYLWTTLIRGYV 378
           Q K IH  ++  G+  +   +  L       G +  AR  FD+M  P   +W  +I GY 
Sbjct: 288 QGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYA 347

Query: 377 KNELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVHVHVIKFGVELDVI 198
           KN    ++V +++ M+   +R D  T    +  C  +  + + + +  ++ K     DV 
Sbjct: 348 KNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVF 407

Query: 197 VRTELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNG 18
           V T L+  +AK G V  A  +F+  +++D+V WSA++  Y  +G    AI +F  M+  G
Sbjct: 408 VNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAG 467

Query: 17  VKPD 6
           V P+
Sbjct: 468 VCPN 471



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 48/182 (26%), Positives = 95/182 (52%)
 Frame = -1

Query: 551 KQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMHKPRSYLWTTLIRGYVKN 372
           K++H  +   G          L+      G +  AR +F+ +       WT++I GY +N
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQN 248

Query: 371 ELFIDSVLVYEHMVKVGVRPDKFTFPFVLKGCGYLEEILVGEEVHVHVIKFGVELDVIVR 192
            L ++++ ++  M +  V+PD      VL+    +E++  G+ +H  V+K G+E +  + 
Sbjct: 249 GLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL 308

Query: 191 TELMSFYAKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVK 12
             L + YAK G+V  A   F+ M   +++ W+A++S YA+ GY ++A+ +F++M    ++
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIR 368

Query: 11  PD 6
            D
Sbjct: 369 TD 370