BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040496
         (419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
emb|CBI36294.3| unnamed protein product [Vitis vinifera]              114   6e-24
ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
ref|XP_002530894.1| pentatricopeptide repeat-containing protein,...   103   1e-20

>ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 6/107 (5%)
 Frame = +2

Query: 2   YAPVSTYAVMIHGLCKKKGKVEDACHYFEMMIDEGLPPYPCTCEXXXXXXXXXXFREKTQ 181
           Y   STYAVM+HG CKKKGK+E+AC YFEMMID+G+PPY CT E          F E+  
Sbjct: 426 YPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSEQID 485

Query: 182 ILTDKMLQSTSCSIQELSKIMAGDKVYKELCSE------EEKPKGYE 304
           +L  KM +STSC IQELS +M G+K    L SE      EE+ +GYE
Sbjct: 486 VLAGKMERSTSCVIQELSSVMRGEKASGRLRSEEQNLPSEERGEGYE 532


>emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 6/107 (5%)
 Frame = +2

Query: 2   YAPVSTYAVMIHGLCKKKGKVEDACHYFEMMIDEGLPPYPCTCEXXXXXXXXXXFREKTQ 181
           Y   STYAVM+HG CKKKGK+E+AC YFEMMID+G+PPY CT E          F E+  
Sbjct: 399 YPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSEQID 458

Query: 182 ILTDKMLQSTSCSIQELSKIMAGDKVYKELCSE------EEKPKGYE 304
           +L  KM +STSC IQELS +M G+K    L SE      EE+ +GYE
Sbjct: 459 VLAGKMERSTSCVIQELSSVMRGEKASGRLRSEEQNLPSEERGEGYE 505


>ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/85 (60%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   YAPVSTYAVMIHGLCKKKGKVEDACHYFEMMIDEGLPPYPCTCEXXXXXXXXXXFREKTQ 181
           Y  VSTYAVMIHG CKKK K+E+AC YFEMMIDEG+PPY  T E          F+++  
Sbjct: 427 YPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLRDRLLGIGFKDQVA 486

Query: 182 ILTDKMLQSTSCSIQELSKIMAGDK 256
           IL DKM +STSCSIQEL+ +M+G K
Sbjct: 487 ILGDKMKRSTSCSIQELANLMSGGK 511


>ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/85 (60%), Positives = 61/85 (71%)
 Frame = +2

Query: 2   YAPVSTYAVMIHGLCKKKGKVEDACHYFEMMIDEGLPPYPCTCEXXXXXXXXXXFREKTQ 181
           Y  VSTYAVMIHG CKKK K+E+AC YFEMMIDEG+PPY  T E          F+++  
Sbjct: 427 YPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLRDRLLGIGFKDQVA 486

Query: 182 ILTDKMLQSTSCSIQELSKIMAGDK 256
           IL DKM +STSCSIQEL+ +M+G K
Sbjct: 487 ILGDKMKRSTSCSIQELANLMSGGK 511


>ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529547|gb|EEF31500.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 519

 Score =  103 bits (258), Expect = 1e-20
 Identities = 52/94 (55%), Positives = 62/94 (65%)
 Frame = +2

Query: 2   YAPVSTYAVMIHGLCKKKGKVEDACHYFEMMIDEGLPPYPCTCEXXXXXXXXXXFREKTQ 181
           Y  VSTY+VM+HGLCKKKGK+E+AC YFEMMIDEG+PPY  T E            +  +
Sbjct: 420 YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPPYSSTVEILRNRLIGLGLLDYIE 479

Query: 182 ILTDKMLQSTSCSIQELSKIMAGDKVYKELCSEE 283
           IL  KM  ST+CSIQEL+  M G KV+    SEE
Sbjct: 480 ILAGKMEHSTACSIQELAIAMRGGKVHVRSRSEE 513