BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040408
         (231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26320.3| unnamed protein product [Vitis vinifera]               81   1e-13
ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi...    81   1e-13
ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    64   2e-08
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ...    63   3e-08

>emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/76 (55%), Positives = 46/76 (60%)
 Frame = +2

Query: 2   TTTLIQHTYPXXXXXXXXXXXXXXXXXXIFNQISNPSIFLYNTLISSFTNNPHHTHIAFS 181
           TT LI HTYP                  IFN I NP+IFLYNTLISS  N   HTHIAFS
Sbjct: 34  TTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFS 93

Query: 182 LYSQILTHNSLKPTCF 229
           LYS++LTH +LKP  F
Sbjct: 94  LYSRVLTHTTLKPNGF 109


>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/76 (55%), Positives = 46/76 (60%)
 Frame = +2

Query: 2   TTTLIQHTYPXXXXXXXXXXXXXXXXXXIFNQISNPSIFLYNTLISSFTNNPHHTHIAFS 181
           TT LI HTYP                  IFN I NP+IFLYNTLISS  N   HTHIAFS
Sbjct: 34  TTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFS 93

Query: 182 LYSQILTHNSLKPTCF 229
           LYS++LTH +LKP  F
Sbjct: 94  LYSRVLTHTTLKPNGF 109


>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +2

Query: 86  IFNQISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCF 229
           IFN I NP++FLYNTLISS T++    H+AFSLY+ ILTH +L+P  F
Sbjct: 58  IFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSF 105


>ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g43790-like [Glycine max]
          Length = 516

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 28/48 (58%), Positives = 37/48 (77%)
 Frame = +2

Query: 86  IFNQISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCF 229
           IFN I +P++FLYNTLISS T++    H+A SLY+ ILTHN+L+P  F
Sbjct: 56  IFNHIPSPTLFLYNTLISSLTHHSDQIHLALSLYNHILTHNTLQPNSF 103


>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484374|gb|AES65577.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 740

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 2/50 (4%)
 Frame = +2

Query: 86  IFNQISNPSIFLYNTLISSFTN--NPHHTHIAFSLYSQILTHNSLKPTCF 229
           IFN ISNP+IFLYNTLISS  N  N +  H+AFSLY++ILT+ +L+P  F
Sbjct: 202 IFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSF 251