BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040285
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]     250   1e-64
ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac...   250   1e-64
gb|ADD31235.1| RNA polymerase alpha subunit protein [Trochodendr...   244   4e-63
ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis ...   244   5e-63
ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucife...   244   7e-63

>gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]
          Length = 339

 Score =  250 bits (638), Expect = 1e-64
 Identities = 120/127 (94%), Positives = 122/127 (96%)
 Frame = -3

Query: 383 CVKGPGYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYCMKTPNNAQKG 204
           CVKGPGYVTAQDII PPSVEIVDTTQHIASLTEP+D CIGLQIE NRGY MKTPNNAQKG
Sbjct: 109 CVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKG 168

Query: 203 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKDALYEASRNLIDLFIP 24
           SYPIDAVFMPVRNANHSIHSYGNGNE QEILFLEIWTNGSLTPK+ALYEASRNLIDLFIP
Sbjct: 169 SYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 228

Query: 23  FLHAEEQ 3
           FLHAEEQ
Sbjct: 229 FLHAEEQ 235


>ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus]
           gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit
           [Ranunculus macranthus]
          Length = 346

 Score =  250 bits (638), Expect = 1e-64
 Identities = 120/127 (94%), Positives = 122/127 (96%)
 Frame = -3

Query: 383 CVKGPGYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYCMKTPNNAQKG 204
           CVKGPGYVTAQDII PPSVEIVDTTQHIASLTEP+D CIGLQIE NRGY MKTPNNAQKG
Sbjct: 109 CVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKG 168

Query: 203 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKDALYEASRNLIDLFIP 24
           SYPIDAVFMPVRNANHSIHSYGNGNE QEILFLEIWTNGSLTPK+ALYEASRNLIDLFIP
Sbjct: 169 SYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 228

Query: 23  FLHAEEQ 3
           FLHAEEQ
Sbjct: 229 FLHAEEQ 235


>gb|ADD31235.1| RNA polymerase alpha subunit protein [Trochodendron aralioides]
          Length = 337

 Score =  244 bits (624), Expect = 4e-63
 Identities = 117/127 (92%), Positives = 123/127 (96%)
 Frame = -3

Query: 383 CVKGPGYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYCMKTPNNAQKG 204
           CV+GPGYVTAQDII PPSVEIVD TQHIASLTEPIDLCIGLQIERNRGY MKTPNN+Q G
Sbjct: 109 CVRGPGYVTAQDIISPPSVEIVDATQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDG 168

Query: 203 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKDALYEASRNLIDLFIP 24
           SYPIDAVFMPVRNA+HSIHSYGNGNEKQEILFLEIWTNGSLTPK+AL+EASRNLIDLFIP
Sbjct: 169 SYPIDAVFMPVRNASHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIP 228

Query: 23  FLHAEEQ 3
           FLHAEE+
Sbjct: 229 FLHAEEE 235


>ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis saniculifolia]
           gi|226933914|gb|ACO92047.1| RNA polymerase alpha subunit
           [Megaleranthis saniculifolia]
          Length = 328

 Score =  244 bits (623), Expect = 5e-63
 Identities = 119/127 (93%), Positives = 122/127 (96%)
 Frame = -3

Query: 383 CVKGPGYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYCMKTPNNAQKG 204
           CVKGPGYVTAQDII PPSVEIVD TQHIASLTEPIDLCI LQIERNRGY MKTPNNAQ+ 
Sbjct: 109 CVKGPGYVTAQDIISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQER 168

Query: 203 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKDALYEASRNLIDLFIP 24
           SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWT+GSLTPK+ALYEASRNLIDLFIP
Sbjct: 169 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIP 228

Query: 23  FLHAEEQ 3
           FLHAEEQ
Sbjct: 229 FLHAEEQ 235


>ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucifera]
           gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
           [Nelumbo nucifera] gi|290489668|gb|ADD31218.1| RNA
           polymerase alpha subunit protein [Nelumbo nucifera]
           gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 339

 Score =  244 bits (622), Expect = 7e-63
 Identities = 117/127 (92%), Positives = 123/127 (96%)
 Frame = -3

Query: 383 CVKGPGYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYCMKTPNNAQKG 204
           CV+GPGYVTAQDII PPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGY MKTPNN+Q G
Sbjct: 109 CVRGPGYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDG 168

Query: 203 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKDALYEASRNLIDLFIP 24
           SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPK+AL+EASRNLIDLFIP
Sbjct: 169 SYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIP 228

Query: 23  FLHAEEQ 3
           FL A+E+
Sbjct: 229 FLDAQEE 235