BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040275
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADO14118.1| fusion protein [Blueberry latent virus]                100   9e-20
ref|YP_003934623.1| fusion protein [Blueberry latent virus] gi|2...   100   9e-20
ref|YP_003868436.1| putative fusion protein [Rhododendron virus ...    99   3e-19
gb|ABC96788.1| RNA-dependent RNA polymerase-like protein [Southe...    98   8e-19
ref|YP_002321509.1| fusion protein p122 [Southern tomato virus] ...    98   8e-19

>gb|ADO14118.1| fusion protein [Blueberry latent virus]
          Length = 1054

 Score =  100 bits (250), Expect = 9e-20
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
 Frame = +2

Query: 35   PPLQVSKVKACFPQATNLSKGTSHMLDKATWVRFEGACDID---GKPHIWKYVVEGKPKF 205
            PP  V+K +A FP  T+LSKGTS +L++  WV+FEG   ID   G  H W+Y  +GKPKF
Sbjct: 751  PPFFVTKAQAVFPPGTDLSKGTSSILNQCKWVQFEGEIIIDEAMGLSHRWEYRFQGKPKF 810

Query: 206  LLCYWLENGRLICPTYINAKKLLFP*GIHENLEQYEQAV 322
            L  YWL +GR I P   + ++LL+P G+H+ +E YE AV
Sbjct: 811  LANYWLPDGRSIRPATDSLERLLYPEGLHQTIEDYEMAV 849


>ref|YP_003934623.1| fusion protein [Blueberry latent virus] gi|269850216|gb|ABO36236.2|
            fusion protein [Blueberry latent virus]
            gi|308097096|gb|ADO14116.1| fusion protein [Blueberry
            latent virus] gi|308097102|gb|ADO14120.1| fusion protein
            [Blueberry latent virus] gi|339895714|dbj|BAK52524.1|
            fusion protein [Blueberry latent virus]
          Length = 1054

 Score =  100 bits (250), Expect = 9e-20
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
 Frame = +2

Query: 35   PPLQVSKVKACFPQATNLSKGTSHMLDKATWVRFEGACDID---GKPHIWKYVVEGKPKF 205
            PP  V+K +A FP  T+LSKGTS +L++  WV+FEG   ID   G  H W+Y  +GKPKF
Sbjct: 751  PPFFVTKAQAVFPPGTDLSKGTSSILNQCKWVQFEGEIIIDEAMGLSHRWEYRFQGKPKF 810

Query: 206  LLCYWLENGRLICPTYINAKKLLFP*GIHENLEQYEQAV 322
            L  YWL +GR I P   + ++LL+P G+H+ +E YE AV
Sbjct: 811  LANYWLPDGRSIRPATDSLERLLYPEGLHQTIEDYEMAV 849


>ref|YP_003868436.1| putative fusion protein [Rhododendron virus A]
            gi|304557388|gb|ADM36020.1| putative fusion protein
            [Rhododendron virus A]
          Length = 1077

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 51/98 (52%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
 Frame = +2

Query: 38   PLQVSKVKACFPQATNLSKGTSHMLDKATWVRFEGACDID---GKPHIWKYVVEGKPKFL 208
            P  V + +A FP  T+LS+GTS ++D A WVR EG   ID   G  H W+Y   GKPKFL
Sbjct: 775  PYYVERYQATFPIGTDLSEGTSRLMDSAIWVRLEGGPIIDANRGLSHRWEYRFHGKPKFL 834

Query: 209  LCYWLENGRLICPTYINAKKLLFP*GIHENLEQYEQAV 322
             CYWL +GR I P +   +KLL+P GIH +LE YE AV
Sbjct: 835  SCYWLPDGRPIRPAHDCLEKLLWPEGIHGDLETYEAAV 872


>gb|ABC96788.1| RNA-dependent RNA polymerase-like protein [Southern tomato virus]
          Length = 299

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
 Frame = +2

Query: 35  PPLQVSKVKACFPQATNLSKGTSHMLDKATWVRFEGACDID---GKPHIWKYVVEGKPKF 205
           PP  V   +A F + T+LSKGTS ++ KA W  FE    ID   G  H W+Y  +G PKF
Sbjct: 104 PPFHVRTFQAVFKEGTDLSKGTSKIMKKAYWREFEDELRIDQEKGLSHRWEYRFKGAPKF 163

Query: 206 LLCYWLENGRLICPTYINAKKLLFP*GIHENLEQYEQAV 322
           L CYWLE+GR I P++ N +KLL+P G+H N++ Y  AV
Sbjct: 164 LSCYWLEDGRPIRPSHENLEKLLYPEGVHANIDDYIAAV 202


>ref|YP_002321509.1| fusion protein p122 [Southern tomato virus]
            gi|133711705|gb|ABO36238.1| fusion protein p122 [Southern
            tomato virus]
          Length = 1062

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
 Frame = +2

Query: 35   PPLQVSKVKACFPQATNLSKGTSHMLDKATWVRFEGACDID---GKPHIWKYVVEGKPKF 205
            PP  V   +A F + T+LSKGTS ++ KA W  FE    ID   G  H W+Y  +G PKF
Sbjct: 761  PPFHVRTFQAVFKEGTDLSKGTSKIMKKAYWREFEDELRIDQEKGLSHRWEYRFKGAPKF 820

Query: 206  LLCYWLENGRLICPTYINAKKLLFP*GIHENLEQYEQAV 322
            L CYWLE+GR I P++ N +KLL+P G+H N++ Y  AV
Sbjct: 821  LSCYWLEDGRPIRPSHENLEKLLYPEGVHANIDDYIAAV 859