BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040268
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containi...   122   2e-26
emb|CBI32989.3| unnamed protein product [Vitis vinifera]              122   2e-26
emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]   122   2e-26
ref|XP_002518506.1| pentatricopeptide repeat-containing protein,...   113   1e-23
ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-23

>ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Vitis vinifera]
          Length = 396

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/93 (60%), Positives = 71/93 (76%)
 Frame = +3

Query: 3   SDLAKALFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYVDMLKKGIEPDASCYYT 182
           S  AKAL + +LAR MKPN+ TY HLI GF KEGN++E  +L+ DM+ +G +PD+ CY+T
Sbjct: 261 SSEAKALLDGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVNRGCKPDSDCYFT 320

Query: 183 LVYYLCQGGDFENALRACKASMLNQWFPNFATM 281
           LVY+LCQGGDFE+ALR CK  M   WFPN +TM
Sbjct: 321 LVYFLCQGGDFESALRFCKECMEKGWFPNISTM 353


>emb|CBI32989.3| unnamed protein product [Vitis vinifera]
          Length = 412

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/93 (60%), Positives = 71/93 (76%)
 Frame = +3

Query: 3   SDLAKALFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYVDMLKKGIEPDASCYYT 182
           S  AKAL + +LAR MKPN+ TY HLI GF KEGN++E  +L+ DM+ +G +PD+ CY+T
Sbjct: 277 SSEAKALLDGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVNRGCKPDSDCYFT 336

Query: 183 LVYYLCQGGDFENALRACKASMLNQWFPNFATM 281
           LVY+LCQGGDFE+ALR CK  M   WFPN +TM
Sbjct: 337 LVYFLCQGGDFESALRFCKECMEKGWFPNISTM 369


>emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]
          Length = 396

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/93 (60%), Positives = 71/93 (76%)
 Frame = +3

Query: 3   SDLAKALFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYVDMLKKGIEPDASCYYT 182
           S  AKAL + +LAR MKPN+ TY HLI GF KEGN++E  +L+ DM+ +G +PD+ CY+T
Sbjct: 261 SSEAKALLDGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVNRGCKPDSDCYFT 320

Query: 183 LVYYLCQGGDFENALRACKASMLNQWFPNFATM 281
           LVY+LCQGGDFE+ALR CK  M   WFPN +TM
Sbjct: 321 LVYFLCQGGDFESALRFCKECMEKGWFPNISTM 353


>ref|XP_002518506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542351|gb|EEF43893.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 397

 Score =  113 bits (283), Expect = 1e-23
 Identities = 52/90 (57%), Positives = 68/90 (75%)
 Frame = +3

Query: 12  AKALFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYVDMLKKGIEPDASCYYTLVY 191
           AKAL + ML+R MKPN+VTY HLI GF  EG++E   RL+ DM+ +G +PD++CY+TL++
Sbjct: 265 AKALLDGMLSRQMKPNSVTYAHLIHGFCNEGDLEGGKRLFKDMVNRGYQPDSACYFTLLH 324

Query: 192 YLCQGGDFENALRACKASMLNQWFPNFATM 281
           YLC+G DFE ALR CK S+   W PN ATM
Sbjct: 325 YLCKGQDFETALRICKESIGKDWVPNIATM 354


>ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449471723|ref|XP_004153390.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449530564|ref|XP_004172264.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
          Length = 405

 Score =  112 bits (280), Expect = 3e-23
 Identities = 49/90 (54%), Positives = 65/90 (72%)
 Frame = +3

Query: 12  AKALFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYVDMLKKGIEPDASCYYTLVY 191
           AKALF+ ML+RGM PN+VTY  LI GF KEGN++E   ++  M+  G +PD+ CY+TL Y
Sbjct: 273 AKALFDGMLSRGMDPNSVTYCELIHGFCKEGNLDEAKSIFKRMINSGCQPDSECYFTLTY 332

Query: 192 YLCQGGDFENALRACKASMLNQWFPNFATM 281
           +LC+GGD+E A + C  SM   W PNF+TM
Sbjct: 333 FLCRGGDYETAFKICLESMKKGWVPNFSTM 362