BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040259
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
ref|XP_002332376.1| predicted protein [Populus trichocarpa] gi|2...   165   3e-39
emb|CBI28140.3| unnamed protein product [Vitis vinifera]              142   4e-32
ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi...   112   2e-23
ref|XP_002512534.1| pentatricopeptide repeat-containing protein,...   112   2e-23

>ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  177 bits (448), Expect = 1e-42
 Identities = 86/115 (74%), Positives = 97/115 (84%)
 Frame = +3

Query: 3   IGFNNVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLF 182
           IGF+ V LT+ALMDVY KCGC  LAR LF++MPEKNLFCWNI+INGHV DSDYEEALSLF
Sbjct: 269 IGFHTV-LTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLF 327

Query: 183 WEMQLKGIKADQVTMVSLVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLVD 347
            EMQL G+K D+VTM SL++ CTHL  LE+GKWLH YIEKE I+VDV LGT LVD
Sbjct: 328 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVD 382



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
 Frame = +3

Query: 3   IGF-NNVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSL 179
           +GF ++  +   LM++Y  CGC+  AR +FD+M  K++  W  +I  +       EA+ L
Sbjct: 166 LGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKL 225

Query: 180 FWEMQLKGIKADQVTMVSLVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLVD 347
           F  M++  +K +++T+V+++  C     LE  K +H YI++  I    VL + L+D
Sbjct: 226 FRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMD 281



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           +V L TAL+D+Y KCG +  A  +F EMPEK++  W  LI G  +     +AL LF EMQ
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432

Query: 195 LKGIKADQVTMVSLVLVCTH 254
           +  +K D +T V ++  C+H
Sbjct: 433 MSEVKPDAITFVGVLAACSH 452


>ref|XP_002332376.1| predicted protein [Populus trichocarpa] gi|222832200|gb|EEE70677.1|
           predicted protein [Populus trichocarpa]
          Length = 660

 Score =  165 bits (418), Expect = 3e-39
 Identities = 81/111 (72%), Positives = 90/111 (81%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           +VVL T LMDVY KCGCV LAR LFD+  EKNLF WNI+INGHV DS+YEEAL LF EMQ
Sbjct: 221 HVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQ 280

Query: 195 LKGIKADQVTMVSLVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLVD 347
            KGIK D+VTM SL+L CTHL  LE+GKWLHAYI+K+ I VDV LGT LVD
Sbjct: 281 TKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVD 331



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 36/87 (41%), Positives = 52/87 (59%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           +V L TAL+D+Y KCG +  A  +F EMPEK++  W  LI G  +    E AL  F EM 
Sbjct: 322 DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMH 381

Query: 195 LKGIKADQVTMVSLVLVCTHLVTLEVG 275
           +KG+K D +T V ++  C+H   ++ G
Sbjct: 382 IKGVKPDAITFVGVLAACSHAGFVDEG 408



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
 Frame = +3

Query: 3   IGF-NNVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSL 179
           +GF ++      LM++Y  CGC+  AR +FD+M +K +  W  +I  H       EA+ L
Sbjct: 114 LGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRL 173

Query: 180 FWE-MQLKGIKADQVTMVSLVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLVD 347
           F   M+ + +K ++VT+V+++  C     L + K +H YI++      VVL T L+D
Sbjct: 174 FDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMD 230


>emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  142 bits (357), Expect = 4e-32
 Identities = 75/148 (50%), Positives = 91/148 (61%), Gaps = 33/148 (22%)
 Frame = +3

Query: 3   IGF-NNVVLTTALMDVY*KCGCVSLARALFDEMPEK------------------------ 107
           +GF ++  +   LM++Y  CGC+  AR +FD+M  K                        
Sbjct: 104 LGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKL 163

Query: 108 --------NLFCWNILINGHVVDSDYEEALSLFWEMQLKGIKADQVTMVSLVLVCTHLVT 263
                   NLFCWNI+INGHV DSDYEEALSLF EMQL G+K D+VTM SL++ CTHL  
Sbjct: 164 FRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGA 223

Query: 264 LEVGKWLHAYIEKENIKVDVVLGTTLVD 347
           LE+GKWLH YIEKE I+VDV LGT LVD
Sbjct: 224 LELGKWLHVYIEKEKIEVDVALGTALVD 251



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           +V L TAL+D+Y KCG +  A  +F EMPEK++  W  LI G  +     +AL LF EMQ
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301

Query: 195 LKGIKADQVTMVSLVLVCTH 254
           +  +K D +T V ++  C+H
Sbjct: 302 MSEVKPDAITFVGVLAACSH 321


>ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  112 bits (281), Expect = 2e-23
 Identities = 51/98 (52%), Positives = 70/98 (71%)
 Frame = +3

Query: 54  KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQLKGIKADQVTMVS 233
           KCG V  ARALFD MPEK++  W+ +I+G+     + E L+LF EMQL  I+ D+  +VS
Sbjct: 382 KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441

Query: 234 LVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLVD 347
           ++  CTHL  L+ GKW+HAYI K  +KV+V+LGTTL+D
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLD 479



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/110 (35%), Positives = 66/110 (60%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           N+V + +++ +  K G V  A  LF+EM EK++  W+ LI+G+  +  YEEAL +F EM 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 195 LKGIKADQVTMVSLVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLV 344
             G++ D+V +VS++  C HL  ++ GK +H  + +  I+  V L   L+
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALI 346



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           NV+L T L+D+Y KCGCV  A  +F+ M EK +  WN LI G  V+   E +L +F EM+
Sbjct: 470 NVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMK 529

Query: 195 LKGIKADQVTMVSLVLVCTHLVTLEVGKWLHA-YIEKENIKVDVVLGTTLVD 347
             G+  +++T + ++  C H+  ++ G+   A  IEK  I+ +V     +VD
Sbjct: 530 NNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 581


>ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548495|gb|EEF49986.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 444

 Score =  112 bits (281), Expect = 2e-23
 Identities = 49/105 (46%), Positives = 74/105 (70%)
 Frame = +3

Query: 33  ALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQLKGIKA 212
           +++  Y KCG +  A+ALFD M +K+L  W+ +I+G+     + E L+LF EMQL G+K 
Sbjct: 230 SMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKP 289

Query: 213 DQVTMVSLVLVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLVD 347
           D+ T+VS+V  CTHL  L+ GKW+H Y+ K  +K++V+LGTTL+D
Sbjct: 290 DETTLVSVVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLID 334



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/95 (38%), Positives = 55/95 (57%)
 Frame = +3

Query: 60  GCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQLKGIKADQVTMVSLV 239
           G V+ A  LF EM +K+L  W+ LI+G+  +  YEEAL  F +M   GI  D+V +VS++
Sbjct: 107 GDVTEAYRLFSEMCKKDLVSWSALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVL 166

Query: 240 LVCTHLVTLEVGKWLHAYIEKENIKVDVVLGTTLV 344
             C HL  ++ GK +H+   K  I+  V L   L+
Sbjct: 167 SACAHLFAVKTGKLVHSLAVKIGIESYVNLQNALI 201



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/88 (35%), Positives = 52/88 (59%)
 Frame = +3

Query: 15  NVVLTTALMDVY*KCGCVSLARALFDEMPEKNLFCWNILINGHVVDSDYEEALSLFWEMQ 194
           NV+L T L+D+Y K GCV  A  +F  M EK +  WN +I G  ++     +L  F EM+
Sbjct: 325 NVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMK 384

Query: 195 LKGIKADQVTMVSLVLVCTHLVTLEVGK 278
             G+  +++T V++++ C H+  +E G+
Sbjct: 385 DCGVVPNEITFVAVLVACRHMGLVEEGR 412