BLASTX nr result
ID: Coptis23_contig00040248
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00040248
(374 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera] 144 8e-33
ref|XP_001764438.1| predicted protein [Physcomitrella patens sub... 99 3e-19
ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi... 99 3e-19
gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygr... 99 3e-19
ref|XP_002976651.1| hypothetical protein SELMODRAFT_105614 [Sela... 98 8e-19
>emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
Length = 799
Score = 144 bits (363), Expect = 8e-33
Identities = 74/121 (61%), Positives = 89/121 (73%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFY 195
E ++VL NNIMIMYSK GD T KVF+ M ERNLFSWT +IGA S + GD K Y
Sbjct: 86 EPSLVLLNNIMIMYSKFGDFGETFKVFEGMDERNLFSWTVMIGACSKN--GDAEKAIELY 143
Query: 194 RKMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
KM+ SG+KAD FLYPLV K+CG +K LRRG+ VHG+V+ +G D+VVMNS+IDMY KC
Sbjct: 144 GKMISSGVKADCFLYPLVLKSCGAVKDLRRGQCVHGEVLITGLLGDVVVMNSLIDMYMKC 203
Query: 14 E 12
E
Sbjct: 204 E 204
Score = 66.6 bits (161), Expect = 2e-09
Identities = 34/122 (27%), Positives = 66/122 (54%)
Frame = -1
Query: 371 GNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFYR 192
G+VV+ N+++ MY KC V + +VFD+M R++ +WT +I Y G ++G +
Sbjct: 188 GDVVVMNSLIDMYMKCEMVGDSERVFDEMDVRDVITWTTMIVGYMQMGRG--LEGLELLK 245
Query: 191 KMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKCE 12
+M+ S ++ + V + L+ +++HG +GFE++ V +++D+Y C
Sbjct: 246 EMLSSQVRPSSATLAGVLPLFSDLGYLKLAKQIHGLAAVTGFEYEKHVGTALVDVYANCG 305
Query: 11 SL 6
L
Sbjct: 306 GL 307
>ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella
patens] gi|162684302|gb|EDQ70705.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 868
Score = 99.4 bits (246), Expect = 3e-19
Identities = 48/118 (40%), Positives = 65/118 (55%)
Frame = -1
Query: 368 NVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFYRK 189
NVV W + + MY KCGD+ KVF +M RN+ SW +I Y+ + GD VK F
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQN--GDIVKVFELLSS 486
Query: 188 MVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
M G + D + +ACG + GL RG+ VH + + G E D VV S+I MY+KC
Sbjct: 487 MKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKC 544
Score = 90.9 bits (224), Expect = 1e-16
Identities = 44/124 (35%), Positives = 73/124 (58%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFY 195
E +V + ++ MYSKCG++ + +VF M+ERN+ SWTA+I A N+ + F Y
Sbjct: 189 ETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA--NAQHRKLNEAFELY 246
Query: 194 RKMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
+M+ +GI + + + +C + L RGRR+H + G E D++V N++I MY KC
Sbjct: 247 EQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKC 306
Query: 14 ESLE 3
S++
Sbjct: 307 NSVQ 310
Score = 79.7 bits (195), Expect = 2e-13
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGD---YVKGF 204
E ++++ N ++ MY KC V+ R++FD MS+R++ SW+A+I Y+ S D + F
Sbjct: 290 ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVF 349
Query: 203 RFYRKMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMY 24
+ +M G+ + + + +AC L +GR++H ++ GFE D + ++ +MY
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMY 409
Query: 23 TKCESL 6
KC S+
Sbjct: 410 AKCGSI 415
Score = 72.8 bits (177), Expect = 3e-11
Identities = 38/120 (31%), Positives = 67/120 (55%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFY 195
E ++ L N+++ YSK DV +VF M+ R++ +W+++I AY+ +N K F +
Sbjct: 88 EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHP--AKAFDTF 145
Query: 194 RKMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
+M + I+ + + + KAC L +GR++H V G E D+ V ++I MY+KC
Sbjct: 146 ERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKC 205
>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 99.4 bits (246), Expect = 3e-19
Identities = 47/107 (43%), Positives = 71/107 (66%)
Frame = -1
Query: 338 MYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFYRKMVLSGIKADN 159
MY+ CGD+ + +FD +S+ N+F+WTA++G YS + D + R Y +M L G+ D
Sbjct: 67 MYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSD--ECVRTYSEMKLKGVLPDK 124
Query: 158 FLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTK 18
+++P VF+ACG + L G +VH DV+ G E+DL V NS+IDMY+K
Sbjct: 125 YVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSK 171
>gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 99.4 bits (246), Expect = 3e-19
Identities = 48/118 (40%), Positives = 66/118 (55%)
Frame = -1
Query: 368 NVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFYRK 189
NVV W +++ MY KCGD+ KVF +MS RN+ SW +I Y+ S GD K F
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQS--GDIAKVFELLSS 508
Query: 188 MVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
M + G + D + +ACG + L RG+ VH + + G E D VV S+I MY+KC
Sbjct: 509 MKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKC 566
Score = 91.7 bits (226), Expect = 6e-17
Identities = 45/124 (36%), Positives = 71/124 (57%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFY 195
E +V + ++ MYSKCG++ L ++F M ERN+ SWTA+I A N+ + F Y
Sbjct: 211 ETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQA--NAQHRKLNEAFELY 268
Query: 194 RKMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
KM+ +GI + + + +C + L RGRR+H + G E D+VV N++I MY KC
Sbjct: 269 EKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKC 328
Query: 14 ESLE 3
++
Sbjct: 329 NCIQ 332
Score = 79.3 bits (194), Expect = 3e-13
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGD---YVKGF 204
E +VV+ N ++ MY KC ++ R+ FD MS+R++ SW+A+I Y+ S D + F
Sbjct: 312 ETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVF 371
Query: 203 RFYRKMVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMY 24
+ +M G+ + + + KAC L +GR++H ++ GFE D + ++ +MY
Sbjct: 372 QLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMY 431
Query: 23 TKCESL 6
KC S+
Sbjct: 432 AKCGSI 437
Score = 73.9 bits (180), Expect = 1e-11
Identities = 38/118 (32%), Positives = 66/118 (55%)
Frame = -1
Query: 368 NVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFYRK 189
++ L N+++ YSK GDV +VF M+ R++ +W+++I AY+ +N K F + +
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHP--AKAFDTFER 169
Query: 188 MVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKC 15
M + I+ + + + KAC L + R +H V SG E D+ V ++I MY+KC
Sbjct: 170 MKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC 227
>ref|XP_002976651.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
gi|300155689|gb|EFJ22320.1| hypothetical protein
SELMODRAFT_105614 [Selaginella moellendorffii]
Length = 341
Score = 97.8 bits (242), Expect = 8e-19
Identities = 49/121 (40%), Positives = 74/121 (61%)
Frame = -1
Query: 368 NVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFYRK 189
++V+ ++ MYS+CG V+ R+VFD MS R+ +WTA+I AY++ TG + ++
Sbjct: 44 DIVVATGLIGMYSRCGSVDRAREVFDRMSYRDTVAWTAMIAAYAH--TGHPRQAMELFKA 101
Query: 188 MVLSGIKADNFLYPLVFKACGGMKGLRRGRRVHGDVICSGFEWDLVVMNSVIDMYTKCES 9
M ++ D F Y V AC GM L G VH +++ GF+ D VV NS++DMY+KC S
Sbjct: 102 MDTWDVRPDGFTYASVINACTGMGALADGMVVHREIVRDGFDGDPVVQNSLVDMYSKCGS 161
Query: 8 L 6
L
Sbjct: 162 L 162
Score = 56.2 bits (134), Expect = 3e-06
Identities = 28/92 (30%), Positives = 50/92 (54%)
Frame = -1
Query: 374 EGNVVLWNNIMIMYSKCGDVELTRKVFDDMSERNLFSWTAVIGAYSNSNTGDYVKGFRFY 195
+G+ V+ N+++ MYSKCG + R VFDDM +R++ +WTA+ Y+ + + +
Sbjct: 143 DGDPVVQNSLVDMYSKCGSLGEARAVFDDMVKRDVATWTALFSGYAKHGFNN--EALETF 200
Query: 194 RKMVLSGIKADNFLYPLVFKACGGMKGLRRGR 99
M L + D ++ V +AC + + GR
Sbjct: 201 WCMALESMALDEIIFTTVLQACSHLGLVDEGR 232