BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040219
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]    91   1e-16
gb|AEJ72555.1| putative retroelement polyprotein [Malus x domest...    80   2e-13
gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]        79   4e-13
gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]      77   1e-12
emb|CAE75905.1| OSJNBa0088I22.18 [Oryza sativa Japonica Group]         75   4e-12

>emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]
          Length = 1355

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 39/79 (49%), Positives = 58/79 (73%)
 Frame = -2

Query: 238  YSLLDVSYSLQEYITYANITSSHHAFLSTVDDVQEPKNFREANSRLVWRKAMQEELRALD 59
            Y    V Y  +++++Y N+++SH A+L+ +  V EPKNF EANS+ +WRK+M +EL+AL+
Sbjct: 860  YIAAAVRYPPEKFLSYQNLSTSHLAYLTAISSVHEPKNFHEANSQPMWRKSMDDELKALE 919

Query: 58   ENNTWDIVMLPYGKKIVDC 2
            E NTW+IV LP GK +V C
Sbjct: 920  ETNTWNIVHLPPGKHVVGC 938


>gb|AEJ72555.1| putative retroelement polyprotein [Malus x domestica]
          Length = 1249

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 34/72 (47%), Positives = 50/72 (69%)
 Frame = -2

Query: 217 YSLQEYITYANITSSHHAFLSTVDDVQEPKNFREANSRLVWRKAMQEELRALDENNTWDI 38
           + +++Y+ Y+ ++SSH   LS +    EP +F+EANS+L+W+ AM EELRAL+EN TW I
Sbjct: 777 HPIEKYLEYSRVSSSHADILSKISASSEPSSFQEANSQLIWQTAMDEELRALNENKTWSI 836

Query: 37  VMLPYGKKIVDC 2
             LP G + V C
Sbjct: 837 TKLPKGMRAVGC 848


>gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]
          Length = 1347

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = -2

Query: 238  YSLLDVSYSLQEYITYANITSSHHAFLSTVDDVQEPKNFREANSRLVWRKAMQEELRALD 59
            Y     +Y ++ YI+YANI  S+ A++S +D++ EP  F +A     WRKAM EEL AL+
Sbjct: 828  YETYCCAYPIENYISYANIKPSYQAYISKLDNLHEPTKFEDAVKIEAWRKAMNEELDALE 887

Query: 58   ENNTWDIVMLPYGKKIVD 5
             N TW +V LP+ KK +D
Sbjct: 888  RNQTWTVVELPHNKKAID 905


>gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1299

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 33/75 (44%), Positives = 54/75 (72%)
 Frame = -2

Query: 226 DVSYSLQEYITYANITSSHHAFLSTVDDVQEPKNFREANSRLVWRKAMQEELRALDENNT 47
           D   ++  Y++Y +++S++ AF++++D VQ PK++REA     W +AM +EL AL++N T
Sbjct: 759 DDENNISNYVSYDSLSSTYKAFIASLDSVQIPKDWREAKQDPRWHQAMLDELEALEKNKT 818

Query: 46  WDIVMLPYGKKIVDC 2
           WD+V  P GKKIV+C
Sbjct: 819 WDLVPFPKGKKIVNC 833


>emb|CAE75905.1| OSJNBa0088I22.18 [Oryza sativa Japonica Group]
          Length = 624

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 32/78 (41%), Positives = 56/78 (71%)
 Frame = -2

Query: 235 SLLDVSYSLQEYITYANITSSHHAFLSTVDDVQEPKNFREANSRLVWRKAMQEELRALDE 56
           S+ D   ++  Y++YA+++S++ AF+++++ V+ P ++REA     W +AM EEL AL++
Sbjct: 346 SVNDDKNNIANYVSYASLSSTYKAFVTSLNSVEIPNDWREAKQDPRWHQAMLEELEALEK 405

Query: 55  NNTWDIVMLPYGKKIVDC 2
           N TWD+V  P GKK+V+C
Sbjct: 406 NKTWDLVPFPKGKKVVNC 423