BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040153
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    63   3e-08
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    62   5e-08
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    61   1e-07
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   1e-07
emb|CAN73538.1| hypothetical protein VITISV_012619 [Vitis vinifera]    60   2e-07

>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/89 (38%), Positives = 56/89 (62%)
 Frame = +3

Query: 33  KMRKTASLQQINEVTSTPRFVLGTAMDEGNIMFPPKDLESVIVPHEDALVITIAMGNYLV 212
           K ++ A ++QIN V ++ + +   A     I F P+D E ++ PH+D LVI++ +    V
Sbjct: 59  KRQRKAYVRQINHVGTSYQSI-PPAYSNTVISFGPEDAEGILFPHQDPLVISVEITQCEV 117

Query: 213 KRVLIDCGSSVDLLFKEAMEEMNIDRDQL 299
           +RVL+D GSS D+LF +A ++M I  D+L
Sbjct: 118 QRVLVDGGSSADVLFYDAFKKMQIPEDRL 146


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/89 (38%), Positives = 56/89 (62%)
 Frame = +3

Query: 33  KMRKTASLQQINEVTSTPRFVLGTAMDEGNIMFPPKDLESVIVPHEDALVITIAMGNYLV 212
           K ++ A ++QI+ V ++ + V   A     I F P+D E ++ PH+D LVI++ +    V
Sbjct: 225 KRQRKAYVRQIHHVGTSYQSV-PPAYSNTVISFGPEDAEGILFPHQDPLVISVEIAQCEV 283

Query: 213 KRVLIDCGSSVDLLFKEAMEEMNIDRDQL 299
           +RVL+D GSS D+LF +A ++M I  D+L
Sbjct: 284 QRVLVDGGSSADVLFYDAFKKMQIPEDRL 312


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1889

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
 Frame = +3

Query: 33  KMRKTASLQQINEV----TSTPRFVLGTAMDEGNIMFPPKDLESVIVPHEDALVITIAMG 200
           K ++ A ++Q+N V     S P     T      I F P+D E ++ PH+D LV+++ + 
Sbjct: 708 KRQRKAYVRQVNHVGTSYQSNPPVYSKTV-----ISFGPEDAEGILFPHQDPLVVSVEIA 762

Query: 201 NYLVKRVLIDCGSSVDLLFKEAMEEMNIDRDQL 299
              V+RVLID GSS D+LF +A ++M I  D+L
Sbjct: 763 QCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRL 795


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1980

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
 Frame = +3

Query: 33  KMRKTASLQQINEV----TSTPRFVLGTAMDEGNIMFPPKDLESVIVPHEDALVITIAMG 200
           K ++ A ++Q+N V     S P     T      I F P+D E ++ PH+D LV+++ + 
Sbjct: 708 KRQRKAYVRQVNHVGTIYQSKPPVYSKTV-----ISFGPEDAEGILFPHQDPLVVSVEIA 762

Query: 201 NYLVKRVLIDCGSSVDLLFKEAMEEMNIDRDQL 299
              V+RVLID GSS D+LF +A ++M I  D+L
Sbjct: 763 QCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRL 795


>emb|CAN73538.1| hypothetical protein VITISV_012619 [Vitis vinifera]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/63 (46%), Positives = 40/63 (63%)
 Frame = +3

Query: 114 EGNIMFPPKDLESVIVPHEDALVITIAMGNYLVKRVLIDCGSSVDLLFKEAMEEMNIDRD 293
           +G I FPP D   VI+PHEDALV+T+ +G + V ++LID G+S DLL   A  +M     
Sbjct: 11  DGPITFPPIDSNRVILPHEDALVLTLGVGGFDVHKILIDLGNSTDLLQMSAYRQMGYSLS 70

Query: 294 QLK 302
            L+
Sbjct: 71  ALE 73