BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040142
         (227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]    77   1e-15
ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containi...    75   1e-14
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]    65   4e-09
ref|XP_002533966.1| pentatricopeptide repeat-containing protein,...    63   3e-08

>emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score = 77.0 bits (188), Expect(2) = 1e-15
 Identities = 33/59 (55%), Positives = 42/59 (71%)
 Frame = +3

Query: 3   KLGTFELGEWIDNYVKKNGFEGNDICMSNALINMHAKCGNIKKACQVLDQMEEKALLPW 179
           KL +FELGEWI  YV K G       ++N L++MHAKCGNIK+ACQ+ D MEEK ++ W
Sbjct: 293 KLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSW 351



 Score = 30.8 bits (68), Expect(2) = 1e-15
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 169 YCRGVAALT*FCQMQREGF 225
           Y  G++AL  FCQMQREGF
Sbjct: 361 YGHGLSALVRFCQMQREGF 379


>ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score = 75.1 bits (183), Expect(2) = 1e-14
 Identities = 33/59 (55%), Positives = 42/59 (71%)
 Frame = +3

Query: 3   KLGTFELGEWIDNYVKKNGFEGNDICMSNALINMHAKCGNIKKACQVLDQMEEKALLPW 179
           KL +FELGEWI  YV K G       ++NAL++MHAKCGNI +ACQ+ D MEEK ++ W
Sbjct: 293 KLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSW 351



 Score = 29.3 bits (64), Expect(2) = 1e-14
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 178 GVAALT*FCQMQREGF 225
           G++AL  FCQMQREGF
Sbjct: 364 GLSALVRFCQMQREGF 379


>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +3

Query: 6   LGTFELGEWIDNYVKKNGFEGNDICMSNALINMHAKCGNIKKACQVLDQMEEKALLPWGS 185
           LG  ELGEWI NY+ K+G     + ++NALI+M+AKCG I+KA +V   ME K+++ W S
Sbjct: 284 LGALELGEWIHNYIDKHGLS-KIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTS 342


>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +3

Query: 6   LGTFELGEWIDNYVKKNGFEGNDICMSNALINMHAKCGNIKKACQVLDQMEEKALLPWGS 185
           LG  ELGEWI NY+ K+G     + ++NALI+M+AKCG I+KA +V   ME K+++ W S
Sbjct: 284 LGALELGEWIHNYIDKHGLS-KIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTS 342


>ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526049|gb|EEF28413.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 25/61 (40%), Positives = 43/61 (70%)
 Frame = +3

Query: 3   KLGTFELGEWIDNYVKKNGFEGNDICMSNALINMHAKCGNIKKACQVLDQMEEKALLPWG 182
           +LG  +LG+W+  Y + NG++GN + + NALI+M+AKCGN++ A  V   +++K L+ W 
Sbjct: 371 RLGALDLGKWVHMYAQSNGYKGN-VYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWN 429

Query: 183 S 185
           +
Sbjct: 430 T 430