BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040108
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146049.1| PREDICTED: 30S ribosomal protein S20, chloro...    69   5e-10
ref|XP_002329074.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
gb|AFK46331.1| unknown [Lotus japonicus] gi|388517753|gb|AFK4693...    62   4e-08
ref|XP_002285149.1| PREDICTED: 30S ribosomal protein S20, chloro...    62   4e-08
ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus...    62   6e-08

>ref|XP_004146049.1| PREDICTED: 30S ribosomal protein S20, chloroplastic-like [Cucumis
           sativus] gi|449507080|ref|XP_004162928.1| PREDICTED: 30S
           ribosomal protein S20, chloroplastic-like [Cucumis
           sativus]
          Length = 184

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
 Frame = +2

Query: 5   SETSFSNCGLSM-KWFRISR-SVVCEVTPNENTDAAARRTRQAGKTQLHDKTKKSELKTR 178
           S ++FSN  LSM K  R+ R SVVCE  P    D+AA+R RQA K ++++K +KSE+KTR
Sbjct: 46  SLSAFSNGCLSMRKTERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTR 105

Query: 179 VKKVLEALD 205
           +KKVLEALD
Sbjct: 106 MKKVLEALD 114


>ref|XP_002329074.1| predicted protein [Populus trichocarpa] gi|222869743|gb|EEF06874.1|
           predicted protein [Populus trichocarpa]
          Length = 182

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/48 (60%), Positives = 40/48 (83%)
 Frame = +2

Query: 62  SVVCEVTPNENTDAAARRTRQAGKTQLHDKTKKSELKTRVKKVLEALD 205
           S+VCE TP +  D+A +RTRQA K ++++K +KSE+KTR+KKVLEALD
Sbjct: 63  SIVCESTPKKKADSAEKRTRQAEKRRVYNKARKSEVKTRMKKVLEALD 110


>gb|AFK46331.1| unknown [Lotus japonicus] gi|388517753|gb|AFK46938.1| unknown
           [Lotus japonicus]
          Length = 177

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = +2

Query: 5   SETSFSNCGLSMKWFRISRSVVCEVTPNENTDAAARRTRQAGKTQLHDKTKKSELKTRVK 184
           S T FS   LS+   +    VVCEV   +  D+A +R RQA K ++++K +KSE+KTR+K
Sbjct: 41  SHTVFSQGSLSLSPVQRRTLVVCEVVTKKKVDSAIKRARQAEKRRIYNKARKSEIKTRMK 100

Query: 185 KVLEALD 205
           KVLEAL+
Sbjct: 101 KVLEALE 107


>ref|XP_002285149.1| PREDICTED: 30S ribosomal protein S20, chloroplastic [Vitis
           vinifera] gi|302142967|emb|CBI20262.3| unnamed protein
           product [Vitis vinifera]
          Length = 183

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
 Frame = +2

Query: 5   SETSFSNCGLSMKWFR--ISRSVVCEVTPNENTDAAARRTRQAGKTQLHDKTKKSELKTR 178
           S+T FS   LS+   R     S+VC+  P    D+AA+R RQA K ++++K +KSE++TR
Sbjct: 45  SQTVFSKGRLSISTIRGPTHHSIVCDAAPMRKADSAAKRVRQAEKRRIYNKARKSEIRTR 104

Query: 179 VKKVLEALD 205
           +KKVLE LD
Sbjct: 105 MKKVLEELD 113


>ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus communis]
           gi|223528058|gb|EEF30134.1| 30S ribosomal protein S20,
           putative [Ricinus communis]
          Length = 185

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/51 (54%), Positives = 38/51 (74%)
 Frame = +2

Query: 53  ISRSVVCEVTPNENTDAAARRTRQAGKTQLHDKTKKSELKTRVKKVLEALD 205
           I  S+VCE  P +  D+AA+R RQA K +++ K  KSE++TR+KKVLEALD
Sbjct: 63  IGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALD 113