BLASTX nr result

ID: Coptis23_contig00040048 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040048
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281517.1| PREDICTED: B3 domain-containing transcriptio...    61   1e-07
emb|CBI32503.3| unnamed protein product [Vitis vinifera]               61   1e-07
emb|CAN82369.1| hypothetical protein VITISV_027620 [Vitis vinifera]    61   1e-07
ref|XP_002315168.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07
ref|XP_002330307.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_002281517.1| PREDICTED: B3 domain-containing transcription factor VRN1-like
           [Vitis vinifera]
          Length = 407

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/75 (38%), Positives = 47/75 (62%)
 Frame = -3

Query: 260 IPKSFFTKYLPRRLEDFKIQASDGKEWTVGYNLNENGMRMSKGVSAFLSGCNIKLGNICI 81
           +P  F  KYL    +  K+Q SDGK+W V     E+ +++SKG + F+   N++ G++C+
Sbjct: 318 MPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNNLEEGDVCV 377

Query: 80  FELVNRKEFELKVKI 36
           FEL+N ++  LKV I
Sbjct: 378 FELINMEDVVLKVSI 392


>emb|CBI32503.3| unnamed protein product [Vitis vinifera]
          Length = 355

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/75 (38%), Positives = 47/75 (62%)
 Frame = -3

Query: 260 IPKSFFTKYLPRRLEDFKIQASDGKEWTVGYNLNENGMRMSKGVSAFLSGCNIKLGNICI 81
           +P  F  KYL    +  K+Q SDGK+W V     E+ +++SKG + F+   N++ G++C+
Sbjct: 266 MPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNNLEEGDVCV 325

Query: 80  FELVNRKEFELKVKI 36
           FEL+N ++  LKV I
Sbjct: 326 FELINMEDVVLKVSI 340


>emb|CAN82369.1| hypothetical protein VITISV_027620 [Vitis vinifera]
          Length = 563

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/75 (38%), Positives = 47/75 (62%)
 Frame = -3

Query: 260 IPKSFFTKYLPRRLEDFKIQASDGKEWTVGYNLNENGMRMSKGVSAFLSGCNIKLGNICI 81
           +P  F  KYL    +  K+Q SDGK+W V     E+ +++SKG + F+   N++ G++C+
Sbjct: 474 MPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNNLEEGDVCV 533

Query: 80  FELVNRKEFELKVKI 36
           FEL+N ++  LKV I
Sbjct: 534 FELINMEDVVLKVSI 548


>ref|XP_002315168.1| predicted protein [Populus trichocarpa] gi|222864208|gb|EEF01339.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = -3

Query: 260 IPKSFFTKYLPRRLEDFKIQASDGKEWTVGYNLNE-NGMRMSKGVSAFLSGCNIKLGNIC 84
           +P  F  ++L       K+Q SDG+EW +  N N+   + +SKG + F    N+K G++C
Sbjct: 255 VPLEFAQRHLSDAPRCIKLQVSDGREWPIQINRNQCRYLSISKGWNEFSQENNLKEGDVC 314

Query: 83  IFELVNRKEFELKVKIVEQ 27
           +FEL+N+++F LKV I  +
Sbjct: 315 VFELINKEKFVLKVAIFHE 333


>ref|XP_002330307.1| predicted protein [Populus trichocarpa] gi|222871342|gb|EEF08473.1|
           predicted protein [Populus trichocarpa]
          Length = 407

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -3

Query: 272 CAQPIPKSFFTKYLPRRLEDFKIQASDGKEWTVGYNLNENG-MRMSKGVSAFLSGCNIKL 96
           C   +P  F  ++L    E  K+Q SDG++W +  N  +   M +S+G + F    N+K 
Sbjct: 317 CFVAVPAEFSKRHLSGVSEHIKLQVSDGRQWPLRLNKTQRARMIISRGWNEFKRENNLKE 376

Query: 95  GNICIFELVNRKEFELKVKI 36
           G++C+FEL+  K+F L+V +
Sbjct: 377 GDVCVFELIKNKKFSLQVSM 396


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