BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040006
         (663 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328049.1| predicted protein [Populus trichocarpa] gi|2...   234   1e-59
ref|XP_003541902.1| PREDICTED: zinc finger CCCH domain-containin...   229   5e-58
ref|XP_002274948.1| PREDICTED: zinc finger CCCH domain-containin...   229   5e-58
ref|XP_003540372.1| PREDICTED: zinc finger CCCH domain-containin...   228   1e-57
gb|ADL36652.1| C3HL domain class transcription factor [Malus x d...   226   3e-57

>ref|XP_002328049.1| predicted protein [Populus trichocarpa] gi|222837458|gb|EEE75837.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score =  234 bits (597), Expect = 1e-59
 Identities = 116/220 (52%), Positives = 135/220 (61%), Gaps = 27/220 (12%)
 Frame = +2

Query: 83  MSSICEEHSYPF-----YSTKNTLKDIILPPRKLLNKSKH-----------SMEEF---- 202
           MS+IC E   P+      S K   +D+ + P KLL K  H           +++ F    
Sbjct: 1   MSTICAEQHKPYTPHQLLSPKRPFRDLEILPGKLLTKKTHQETLDMSPYETNLQRFLPYN 60

Query: 203 PASGCXXXXXXXXXXXXXXFRMYEFKIRRCMRSRSHDWTDCPFAHPGEKARRRDPRRFHY 382
             S                FRMYEFK+RRC RSRSHDWTDCPFAHPGEKARRRDPRRFHY
Sbjct: 61  DYSNEKVLDGELDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHY 120

Query: 383 SGNACADFRHGTCPRGDSCEFAHGVFECWLHPARYRTHACKDGRNCTRKVCFFAHTPRHL 562
           SG  C +F+ G C RG++CEF+HGVFECWLHP+RYRT ACKDG+NC RKVCFFAH+PR L
Sbjct: 121 SGIVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQL 180

Query: 563 RVLP-------LXXXXXXXXXXNHCCYFCHSMASSPTSTL 661
           R+LP                  +HCC  CHSM SSPTSTL
Sbjct: 181 RILPEVSSRNKSLASPCSSLNHSHCCVVCHSMTSSPTSTL 220


>ref|XP_003541902.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like
           [Glycine max]
          Length = 391

 Score =  229 bits (583), Expect = 5e-58
 Identities = 116/233 (49%), Positives = 142/233 (60%), Gaps = 40/233 (17%)
 Frame = +2

Query: 83  MSSICEEH-----SYPFYSTKNTLKDIILPPRKLLNK------------SKHSMEE--FP 205
           MS +C E      S+   S K TL++I +PPRKLL +            S+ +M++   P
Sbjct: 1   MSGVCAEQHKFYPSHQLLSPKKTLREIDIPPRKLLTRRAAKCVGGTDVYSEETMQQKFLP 60

Query: 206 ASGCXXXXXXXXXXXXXXFRMYEFKIRRCMRSRSHDWTDCPFAHPGEKARRRDPRRFHYS 385
           ++                FRM+EFK+R+C RSRSHDWTDCPFAHPGEKARRRDPRR+HYS
Sbjct: 61  SNDSDEDDPYSSDH----FRMFEFKVRQCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYS 116

Query: 386 GNACADFRHGTCPRGDSCEFAHGVFECWLHPARYRTHACKDGRNCTRKVCFFAHTPRHLR 565
           G  C ++R G C R D+CE+AHGVFECWLHP+RYRT ACKDGRNC RKVCFFAHTPR LR
Sbjct: 117 GTVCPEYRRGGCSRDDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLR 176

Query: 566 VLP------------------LXXXXXXXXXXNHCCYFCH---SMASSPTSTL 661
           +LP                  +          N+CC FCH   S ++SPTSTL
Sbjct: 177 ILPVTSSPSSNDMPCKKNLKQVLNHASKTNNNNNCCLFCHCGASSSASPTSTL 229


>ref|XP_002274948.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Vitis
           vinifera]
          Length = 360

 Score =  229 bits (583), Expect = 5e-58
 Identities = 112/200 (56%), Positives = 130/200 (65%), Gaps = 26/200 (13%)
 Frame = +2

Query: 140 KDIILPPRKLLNKSKHSME---------------------EFPASGCXXXXXXXXXXXXX 256
           K I +PPRKLL++  +S+E                     +F    C             
Sbjct: 21  KTIDIPPRKLLSRRANSLESSDIFSDSPKALGAAGETLFQKFLPFNCGDDDESDPYSSDH 80

Query: 257 XFRMYEFKIRRCMRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGNACADFRHGTCPRGDS 436
            FRM+EFK+RRC RSRSHDWTDCPFAHPGEKARRRDPRR+HYSG  C+++R G C RGD+
Sbjct: 81  -FRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCSEYRRGGCSRGDN 139

Query: 437 CEFAHGVFECWLHPARYRTHACKDGRNCTRKVCFFAHTPRHLRVLPL-----XXXXXXXX 601
           CEF+HGVFECWLHPARYRT ACKDG+NC RKVCFFAH+ + LRVLPL             
Sbjct: 140 CEFSHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSRKQLRVLPLHSQTNGTPDVKFS 199

Query: 602 XXNHCCYFCHSMASSPTSTL 661
             NHCC FCHS A+SPTSTL
Sbjct: 200 PLNHCCVFCHS-ATSPTSTL 218


>ref|XP_003540372.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like
           [Glycine max]
          Length = 392

 Score =  228 bits (580), Expect = 1e-57
 Identities = 119/237 (50%), Positives = 140/237 (59%), Gaps = 44/237 (18%)
 Frame = +2

Query: 83  MSSICEEH-----SYPFYSTKNTLKDIILPPRKLLNKSK---------HSMEE------F 202
           MSS+C +      S+   S K TL++I +PPRKLL +           +S EE       
Sbjct: 1   MSSVCAKQHKFYPSHQLLSPKKTLREIDIPPRKLLTRRAAACVGGTDVYSSEETMLQKFL 60

Query: 203 PASGCXXXXXXXXXXXXXXFRMYEFKIRRCMRSRSHDWTDCPFAHPGEKARRRDPRRFHY 382
           P++                FRM+EFK+RRC RSRSHDWTDCPFAHPGEKARRRDPRR+HY
Sbjct: 61  PSNDSDEDDPYSSDH----FRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHY 116

Query: 383 SGNACADFRHGTCPRGDSCEFAHGVFECWLHPARYRTHACKDGRNCTRKVCFFAHTPRHL 562
           SG  C ++  G C RGD+CE+AHGVFECWLHP+RYRT ACKDGRNC RKVCFFAHTPR L
Sbjct: 117 SGTVCPEYPRGGCSRGDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQL 176

Query: 563 RVLPL---------------------XXXXXXXXXXNHCCYFCHSMAS---SPTSTL 661
           R+LP+                               N+CC FCH  AS   SPTSTL
Sbjct: 177 RILPVTTSSPSSNDMPCKKNLNKLLNHASKSNNNNNNNCCLFCHCGASSSVSPTSTL 233


>gb|ADL36652.1| C3HL domain class transcription factor [Malus x domestica]
          Length = 439

 Score =  226 bits (576), Expect = 3e-57
 Identities = 124/254 (48%), Positives = 139/254 (54%), Gaps = 61/254 (24%)
 Frame = +2

Query: 83  MSSICEEH-----SYPFYSTKNTL---KDIILPPRKLLNKSKHSMEEFPASGCXXXXXXX 238
           MSS+C+E      S+   S K TL    +   PPRKLL  ++   +EFP+S         
Sbjct: 1   MSSVCDEQHNFHPSHQLQSFKKTLLRDSNTDFPPRKLL--TRRIPQEFPSSDMYAAADRG 58

Query: 239 XXXXXXX------------------------------FRMYEFKIRRCMRSRSHDWTDCP 328
                                                FRM+EFK+RRC RSRSHDWTDCP
Sbjct: 59  SPRFSSADEALVRKFLPCNTGSDDSDDDEVDPYSSDHFRMFEFKVRRCTRSRSHDWTDCP 118

Query: 329 FAHPGEKARRRDPRRFHYSGNACADFRHGTCPRGDSCEFAHGVFECWLHPARYRTHACKD 508
           FAHPGEKARRRDPRR HYSG  CAD+R G+C RGDSCEF+HGVFECWLHPARYRT ACKD
Sbjct: 119 FAHPGEKARRRDPRRHHYSGTVCADYRRGSCSRGDSCEFSHGVFECWLHPARYRTEACKD 178

Query: 509 GRNCTRKVCFFAHTPRHLRVLPL---------------------XXXXXXXXXXNHCCYF 625
           G+NC RKVCFFAHTPR LRVLP                                 +CC F
Sbjct: 179 GKNCKRKVCFFAHTPRQLRVLPADQVLSPMAGSKKYHLNNSSVGSPRSCSNNNKQYCCLF 238

Query: 626 CHSMA--SSPTSTL 661
           CHS A  SSPTSTL
Sbjct: 239 CHSAAATSSPTSTL 252