BLASTX nr result
ID: Coptis23_contig00039436
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00039436
(435 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002871207.1| 40S ribosomal protein S17 [Arabidopsis lyrat... 134 1e-43
ref|XP_004136500.1| PREDICTED: 40S ribosomal protein S17-like [C... 130 3e-43
gb|AFK36805.1| unknown [Lotus japonicus] 133 5e-42
ref|XP_003535803.1| PREDICTED: 40S ribosomal protein S17-4-like ... 131 8e-42
gb|AEC10963.1| 40S ribosomal protein s17 [Camellia sinensis] 132 1e-41
>ref|XP_002871207.1| 40S ribosomal protein S17 [Arabidopsis lyrata subsp. lyrata]
gi|297317044|gb|EFH47466.1| 40S ribosomal protein S17
[Arabidopsis lyrata subsp. lyrata]
Length = 139
Score = 134 bits (336), Expect(3) = 1e-43
Identities = 64/71 (90%), Positives = 70/71 (98%)
Frame = +2
Query: 80 YYSRMTLDFHTNKKVIQEVSIIPSKRLCNKIAGFSTHLMKRIQRGPVRGISLKLQEEERE 259
YYSRMTLDFHTNKK+++EV+IIPSKRL NKIAGFSTHLMKRIQ+GPVRGISLKLQEEERE
Sbjct: 20 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERE 79
Query: 260 RRMDYVPDESA 292
RRMD+VPDESA
Sbjct: 80 RRMDFVPDESA 90
Score = 47.8 bits (112), Expect(3) = 1e-43
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 8/45 (17%)
Frame = +1
Query: 304 HIKVDKDTLDMLASLGFNDLPGVQVGD--------GMGFGRGRRY 414
HI+VDK+TL+MLASLG ++LPGV D G GRGRRY
Sbjct: 95 HIEVDKETLEMLASLGMSELPGVVKVDPAAAAPVAAFGLGRGRRY 139
Score = 40.8 bits (94), Expect(3) = 1e-43
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +3
Query: 18 MGRVRTKTVKKSSRQVIERY 77
MGRVRTKTVKKSSRQVIE+Y
Sbjct: 1 MGRVRTKTVKKSSRQVIEKY 20
>ref|XP_004136500.1| PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus]
gi|449515869|ref|XP_004164970.1| PREDICTED: 40S
ribosomal protein S17-like [Cucumis sativus]
Length = 139
Score = 130 bits (327), Expect(3) = 3e-43
Identities = 62/71 (87%), Positives = 69/71 (97%)
Frame = +2
Query: 80 YYSRMTLDFHTNKKVIQEVSIIPSKRLCNKIAGFSTHLMKRIQRGPVRGISLKLQEEERE 259
YYSRMT+DFHTNKK+++EV+IIPSKRL NKIAGFSTHLMKRIQ+GPVRGISLKLQEEERE
Sbjct: 20 YYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERE 79
Query: 260 RRMDYVPDESA 292
RRMD+VPD SA
Sbjct: 80 RRMDFVPDVSA 90
Score = 48.5 bits (114), Expect(3) = 3e-43
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 9/45 (20%)
Frame = +1
Query: 307 IKVDKDTLDMLASLGFNDLPGV---------QVGDGMGFGRGRRY 414
I+VDK+TLDML++LG ND+PG+ QVG G+G GRGRRY
Sbjct: 96 IEVDKETLDMLSALGMNDIPGLVQVDPTVPQQVGFGLG-GRGRRY 139
Score = 42.0 bits (97), Expect(3) = 3e-43
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 18 MGRVRTKTVKKSSRQVIERY 77
MGRVRTKTVKKSSRQVIERY
Sbjct: 1 MGRVRTKTVKKSSRQVIERY 20
>gb|AFK36805.1| unknown [Lotus japonicus]
Length = 144
Score = 133 bits (334), Expect(3) = 5e-42
Identities = 63/71 (88%), Positives = 70/71 (98%)
Frame = +2
Query: 80 YYSRMTLDFHTNKKVIQEVSIIPSKRLCNKIAGFSTHLMKRIQRGPVRGISLKLQEEERE 259
YYSRMTLDFHTNKK+++EV++IPSKRL NKIAGFSTHLMKRIQ+GPVRGISLKLQEEERE
Sbjct: 20 YYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERE 79
Query: 260 RRMDYVPDESA 292
RRMD+VPDESA
Sbjct: 80 RRMDFVPDESA 90
Score = 42.0 bits (97), Expect(3) = 5e-42
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 18 MGRVRTKTVKKSSRQVIERY 77
MGRVRTKTVKKSSRQVIERY
Sbjct: 1 MGRVRTKTVKKSSRQVIERY 20
Score = 42.0 bits (97), Expect(3) = 5e-42
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 13/50 (26%)
Frame = +1
Query: 304 HIKVDKDTLDMLASLGFNDLPG-VQV------------GDGMGFGRGRRY 414
HI VDK+TL+MLA+LG ++PG VQV G G G G GRRY
Sbjct: 95 HIAVDKETLEMLAALGMAEIPGVVQVDPVAVQQIPFTRGGGAGGGAGRRY 144
>ref|XP_003535803.1| PREDICTED: 40S ribosomal protein S17-4-like [Glycine max]
Length = 139
Score = 131 bits (330), Expect(3) = 8e-42
Identities = 64/71 (90%), Positives = 69/71 (97%)
Frame = +2
Query: 80 YYSRMTLDFHTNKKVIQEVSIIPSKRLCNKIAGFSTHLMKRIQRGPVRGISLKLQEEERE 259
YYSRMTLDFHTNKKV++EV+IIPSKRL NKIAGFSTHLMKRIQ+GPVRGISLKLQEEERE
Sbjct: 20 YYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERE 79
Query: 260 RRMDYVPDESA 292
RRMD+VPD SA
Sbjct: 80 RRMDFVPDVSA 90
Score = 42.7 bits (99), Expect(3) = 8e-42
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 8/44 (18%)
Frame = +1
Query: 307 IKVDKDTLDMLASLGFNDLPG--------VQVGDGMGFGRGRRY 414
I+VDK+TLDMLA+LG +++PG VQ G G G GRRY
Sbjct: 96 IEVDKETLDMLAALGMSEVPGVVQVDPVAVQAPLGFGRGAGRRY 139
Score = 42.0 bits (97), Expect(3) = 8e-42
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 18 MGRVRTKTVKKSSRQVIERY 77
MGRVRTKTVKKSSRQVIERY
Sbjct: 1 MGRVRTKTVKKSSRQVIERY 20
>gb|AEC10963.1| 40S ribosomal protein s17 [Camellia sinensis]
Length = 149
Score = 132 bits (333), Expect(3) = 1e-41
Identities = 63/71 (88%), Positives = 70/71 (98%)
Frame = +2
Query: 80 YYSRMTLDFHTNKKVIQEVSIIPSKRLCNKIAGFSTHLMKRIQRGPVRGISLKLQEEERE 259
YYS+MTLDFHTNKK+++EV+IIPSKRL NKIAGFSTHLMKRIQ+GPVRGISLKLQEEERE
Sbjct: 20 YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERE 79
Query: 260 RRMDYVPDESA 292
RRMD+VPDESA
Sbjct: 80 RRMDFVPDESA 90
Score = 43.5 bits (101), Expect(3) = 1e-41
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 18/55 (32%)
Frame = +1
Query: 304 HIKVDKDTLDMLASLGFNDLPGVQV------------------GDGMGFGRGRRY 414
HI+VDK+T+D+LASLG +++PGV + G G G G GRRY
Sbjct: 95 HIEVDKETIDLLASLGMSEMPGVVLKEEIGVFAPAIPPYGGGRGGGFGGGAGRRY 149
Score = 39.7 bits (91), Expect(3) = 1e-41
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3
Query: 18 MGRVRTKTVKKSSRQVIERY 77
MGRVR KTVKKSSRQVIERY
Sbjct: 1 MGRVRXKTVKKSSRQVIERY 20