BLASTX nr result

ID: Coptis23_contig00039423 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039423
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306917.1| SAUR family protein [Populus trichocarpa] gi...   112   4e-23
ref|XP_002889033.1| auxin-responsive family protein [Arabidopsis...   111   5e-23
gb|AAF87116.1|AC006434_12 F10A5.20 [Arabidopsis thaliana]             111   7e-23
ref|XP_002277332.1| PREDICTED: auxin-induced protein 6B-like [Vi...   111   7e-23
emb|CAN60527.1| hypothetical protein VITISV_000524 [Vitis vinifera]   111   7e-23

>ref|XP_002306917.1| SAUR family protein [Populus trichocarpa]
           gi|222856366|gb|EEE93913.1| SAUR family protein [Populus
           trichocarpa]
          Length = 149

 Score =  112 bits (279), Expect = 4e-23
 Identities = 52/71 (73%), Positives = 64/71 (90%)
 Frame = -2

Query: 215 SKCSKIRHIVKLRQMLKRWRHKAAMASSTTGPIPSDVPAGHVAITVGTSCRRFVVRATYL 36
           +KC+KIRHIV+LRQML+RWR+KA M+++    IPSDVPAGHVA+ VGTSCRRFVVRATYL
Sbjct: 6   AKCTKIRHIVRLRQMLRRWRNKARMSANR---IPSDVPAGHVAVCVGTSCRRFVVRATYL 62

Query: 35  NHPVFQTLLIQ 3
           NHP+F+ LL+Q
Sbjct: 63  NHPIFKKLLVQ 73


>ref|XP_002889033.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297334874|gb|EFH65292.1| auxin-responsive family
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 154

 Score =  111 bits (278), Expect = 5e-23
 Identities = 51/70 (72%), Positives = 62/70 (88%)
 Frame = -2

Query: 212 KCSKIRHIVKLRQMLKRWRHKAAMASSTTGPIPSDVPAGHVAITVGTSCRRFVVRATYLN 33
           KCSKIRHIV+LRQML+RWR +A M+SS +  +PSDVP+GHVAI VG+SCRRFVVRATYLN
Sbjct: 7   KCSKIRHIVRLRQMLRRWRDQARMSSSFSRRVPSDVPSGHVAIYVGSSCRRFVVRATYLN 66

Query: 32  HPVFQTLLIQ 3
           HP+ + LL+Q
Sbjct: 67  HPILRNLLVQ 76


>gb|AAF87116.1|AC006434_12 F10A5.20 [Arabidopsis thaliana]
          Length = 198

 Score =  111 bits (277), Expect = 7e-23
 Identities = 51/70 (72%), Positives = 62/70 (88%)
 Frame = -2

Query: 212 KCSKIRHIVKLRQMLKRWRHKAAMASSTTGPIPSDVPAGHVAITVGTSCRRFVVRATYLN 33
           KCSKIRHIV+LRQML+RWR +A M+SS +  +PSDVP+GHVA+ VG+SCRRFVVRATYLN
Sbjct: 7   KCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVVRATYLN 66

Query: 32  HPVFQTLLIQ 3
           HPV + LL+Q
Sbjct: 67  HPVLRNLLVQ 76


>ref|XP_002277332.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]
          Length = 151

 Score =  111 bits (277), Expect = 7e-23
 Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
 Frame = -2

Query: 218 FSKCSKIRHIVKLRQMLKRWRHKAAMASSTTGP-IPSDVPAGHVAITVGTSCRRFVVRAT 42
           F KCSKIRHIV+LRQML+RWRHKAA AS  +   IPSDVPAGHVA+ VGT  +RFVVRAT
Sbjct: 5   FGKCSKIRHIVRLRQMLRRWRHKAAEASRMSSSCIPSDVPAGHVAVCVGTDGKRFVVRAT 64

Query: 41  YLNHPVFQTLLIQ 3
           YLNHPVF+ LL++
Sbjct: 65  YLNHPVFKKLLVE 77


>emb|CAN60527.1| hypothetical protein VITISV_000524 [Vitis vinifera]
          Length = 200

 Score =  111 bits (277), Expect = 7e-23
 Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
 Frame = -2

Query: 218 FSKCSKIRHIVKLRQMLKRWRHKAAMASSTTGP-IPSDVPAGHVAITVGTSCRRFVVRAT 42
           F KCSKIRHIV+LRQML+RWRHKAA AS  +   IPSDVPAGHVA+ VGT  +RFVVRAT
Sbjct: 5   FGKCSKIRHIVRLRQMLRRWRHKAAEASRMSSSCIPSDVPAGHVAVCVGTDGKRFVVRAT 64

Query: 41  YLNHPVFQTLLIQ 3
           YLNHPVF+ LL++
Sbjct: 65  YLNHPVFKKLLVE 77


Top