BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039404
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36
ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36
ref|XP_002529506.1| pentatricopeptide repeat-containing protein,...   155   4e-36
ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
emb|CBI29835.3| unnamed protein product [Vitis vinifera]              150   1e-34

>ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score =  155 bits (393), Expect = 2e-36
 Identities = 75/103 (72%), Positives = 88/103 (85%)
 Frame = +1

Query: 1   GLLAEAVGVLREMEGDGIQPNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIAC 180
           G L +AV +LREME DGI PN+V+ICTLL+AC R GQ+VNIDSVLSAAE RGI LNTIAC
Sbjct: 231 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIAC 290

Query: 181 NSAIGSYMSLGEYEKALNIYRFMKEKGLRPDSVTFNVLISGSC 309
           NSAIGSYM++GEYEKA+N+YR M+ K  +PDSVTF +LISG C
Sbjct: 291 NSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCC 333


>ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  155 bits (393), Expect = 2e-36
 Identities = 75/103 (72%), Positives = 88/103 (85%)
 Frame = +1

Query: 1   GLLAEAVGVLREMEGDGIQPNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIAC 180
           G L +AV +LREME DGI PN+V+ICTLL+AC R GQ+VNIDSVLSAAE RGI LNTIAC
Sbjct: 326 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIAC 385

Query: 181 NSAIGSYMSLGEYEKALNIYRFMKEKGLRPDSVTFNVLISGSC 309
           NSAIGSYM++GEYEKA+N+YR M+ K  +PDSVTF +LISG C
Sbjct: 386 NSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCC 428



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 45/94 (47%)
 Frame = +1

Query: 16  AVGVLREMEGDGIQPNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIACNSAIG 195
           A  ++ +M    I P+  T   L++AC  CG       V       G+  + +  N  + 
Sbjct: 84  ATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLS 143

Query: 196 SYMSLGEYEKALNIYRFMKEKGLRPDSVTFNVLI 297
           +Y S  +Y KAL+ +  MK   +RPD+ T N++I
Sbjct: 144 AYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVI 177


>ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531022|gb|EEF32875.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 808

 Score =  155 bits (391), Expect = 4e-36
 Identities = 75/103 (72%), Positives = 90/103 (87%)
 Frame = +1

Query: 1   GLLAEAVGVLREMEGDGIQPNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIAC 180
           GLLA+AV VLREME DGI PNIVTICTLL+AC RCGQ+VNID+VLSAA+ RGIKLNT+AC
Sbjct: 439 GLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVAC 498

Query: 181 NSAIGSYMSLGEYEKALNIYRFMKEKGLRPDSVTFNVLISGSC 309
           NSAIGSYM++GEYEKA+ +Y  M++  + P+SVT+ VLISG C
Sbjct: 499 NSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGCC 541


>ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  150 bits (378), Expect = 1e-34
 Identities = 73/103 (70%), Positives = 88/103 (85%)
 Frame = +1

Query: 1   GLLAEAVGVLREMEGDGIQPNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIAC 180
           GLL EAV +L EME +G+QPNIV+ICTLL+AC RCGQ+V I SVLSAAE RGIKLNT A 
Sbjct: 458 GLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAY 517

Query: 181 NSAIGSYMSLGEYEKALNIYRFMKEKGLRPDSVTFNVLISGSC 309
           NSAIGSY+S+GEY+KAL++YR M+ K ++PD VT+NVLISG C
Sbjct: 518 NSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCC 560



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 25/81 (30%), Positives = 48/81 (59%)
 Frame = +1

Query: 58  PNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIACNSAIGSYMSLGEYEKALNI 237
           P++VT  T++   S CGQ  N  +  +   + G+K N ++ N+ IG+Y S G  ++A ++
Sbjct: 337 PDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV 396

Query: 238 YRFMKEKGLRPDSVTFNVLIS 300
           +  +K+ G  PD V++  L++
Sbjct: 397 FNEIKKNGFHPDVVSYTSLLN 417


>emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  150 bits (378), Expect = 1e-34
 Identities = 73/103 (70%), Positives = 88/103 (85%)
 Frame = +1

Query: 1   GLLAEAVGVLREMEGDGIQPNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIAC 180
           GLL EAV +L EME +G+QPNIV+ICTLL+AC RCGQ+V I SVLSAAE RGIKLNT A 
Sbjct: 458 GLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAY 517

Query: 181 NSAIGSYMSLGEYEKALNIYRFMKEKGLRPDSVTFNVLISGSC 309
           NSAIGSY+S+GEY+KAL++YR M+ K ++PD VT+NVLISG C
Sbjct: 518 NSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCC 560



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 25/81 (30%), Positives = 48/81 (59%)
 Frame = +1

Query: 58  PNIVTICTLLSACSRCGQQVNIDSVLSAAESRGIKLNTIACNSAIGSYMSLGEYEKALNI 237
           P++VT  T++   S CGQ  N  +  +   + G+K N ++ N+ IG+Y S G  ++A ++
Sbjct: 337 PDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSV 396

Query: 238 YRFMKEKGLRPDSVTFNVLIS 300
           +  +K+ G  PD V++  L++
Sbjct: 397 FNEIKKNGFHPDVVSYTSLLN 417