BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039352
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    48   2e-06
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    45   2e-06
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...    45   2e-06
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...    45   2e-06
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...    45   2e-06

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 48.1 bits (113), Expect(2) = 2e-06
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 25   FPFRGLR*GDPISPYLFILASEALSRLLHLQEETNGNIHRVMLKLRSIPFTHL 183
            FP RG+R GDP+SPYLF+  +E LS +L  + E N  IH + +    +  +HL
Sbjct: 990  FPSRGIRQGDPLSPYLFLFCAEVLSNMLR-KAEVNKQIHGMKITKDCLAISHL 1041



 Score = 28.5 bits (62), Expect(2) = 2e-06
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 234  RTNFEEASSMKVVIKRYYKASGQAVNWDKSS 326
            R + +    + ++ K+Y +ASGQ +N+ KSS
Sbjct: 1052 RASNQNIEQLALIFKKYEEASGQKINYAKSS 1082


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = +1

Query: 28   PFRGLR*GDPISPYLFILASEALSRLLHLQEETNGNIHRVMLKLRSIPFTHL 183
            P RGLR GDP+SPYLF+L +E  S LL   EE  G +H + +   +   +HL
Sbjct: 885  PGRGLRQGDPLSPYLFLLCAEGFSALLSKTEE-EGRLHGIRICQGAPSVSHL 935



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 225  ILRRTNFEEASSMKVVIKRYYKASGQAVNWDKSS 326
            IL R N  EA  ++ +++ Y + SGQ +N DKS+
Sbjct: 943  ILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 976


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = +1

Query: 28   PFRGLR*GDPISPYLFILASEALSRLLHLQEETNGNIHRVMLKLRSIPFTHL 183
            P RGLR GDP+SPYLF+L +E  S LL   EE  G +H + +   +   +HL
Sbjct: 858  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEE-EGRLHGIRICQGAPSVSHL 908



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 225  ILRRTNFEEASSMKVVIKRYYKASGQAVNWDKSS 326
            IL R N  EA  ++ +++ Y + SGQ +N DKS+
Sbjct: 916  ILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 949


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = +1

Query: 28  PFRGLR*GDPISPYLFILASEALSRLLHLQEETNGNIHRVMLKLRSIPFTHL 183
           P RGLR GDP+SPYLF+L +E  S LL   EE  G +H + +   +   +HL
Sbjct: 830 PERGLRQGDPLSPYLFLLCAEGFSALLSKTEE-EGRLHGIRICQGAPSVSHL 880



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 225 ILRRTNFEEASSMKVVIKRYYKASGQAVNWDKSS 326
           IL R N  EA  ++ +++ Y + SGQ +N DKS+
Sbjct: 888 ILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 921


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1505

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = +1

Query: 28  PFRGLR*GDPISPYLFILASEALSRLLHLQEETNGNIHRVMLKLRSIPFTHL 183
           P RGLR GDP+SPYLF+L +E  S LL   EE  G +H + +   +   +HL
Sbjct: 826 PERGLRQGDPLSPYLFLLCAEGFSALLSKTEE-EGRLHGIRICQGAPSVSHL 876



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 225 ILRRTNFEEASSMKVVIKRYYKASGQAVNWDKSS 326
           IL R N  EA  ++ +++ Y + SGQ +N DKS+
Sbjct: 884 ILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 917