BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039273
         (525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
emb|CBI38862.3| unnamed protein product [Vitis vinifera]              140   1e-31
ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|NP_171699.1| pentatricopeptide repeat-containing protein [Ar...   123   2e-26
ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|2...   122   3e-26

>ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Vitis vinifera]
          Length = 352

 Score =  145 bits (367), Expect = 3e-33
 Identities = 77/124 (62%), Positives = 88/124 (70%)
 Frame = -2

Query: 524 GAQRVFDAIQFARISPDVKLCALLINAHRMAGQSDGARRVFENMRRAGLTPSDKCVALML 345
           GAQRVFDAIQFA ISPDVKLCALLINA+R+AGQ+  A   FENMRR+GL P+DK +ALML
Sbjct: 227 GAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALML 286

Query: 344 AAYXXXXXXXXXXXXXXXXXXDNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEIK 165
           AAY                  D  VLGKE SE+L  WF+RLGVV EV LVL+EY+AKE  
Sbjct: 287 AAYEKENKLNKALDFLIDLERDGIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKEAS 346

Query: 164 CETY 153
           CE +
Sbjct: 347 CEVH 350


>emb|CBI38862.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score =  140 bits (352), Expect = 1e-31
 Identities = 75/118 (63%), Positives = 85/118 (72%)
 Frame = -2

Query: 524 GAQRVFDAIQFARISPDVKLCALLINAHRMAGQSDGARRVFENMRRAGLTPSDKCVALML 345
           GAQRVFDAIQFA ISPDVKLCALLINA+R+AGQ+  A   FENMRR+GL P+DK +ALML
Sbjct: 227 GAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALML 286

Query: 344 AAYXXXXXXXXXXXXXXXXXXDNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKE 171
           AAY                  D  VLGKE SE+L  WF+RLGVV EV LVL+EY+AKE
Sbjct: 287 AAYEKENKLNKALDFLIDLERDGIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKE 344


>ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g01970-like [Cucumis sativus]
           gi|449480346|ref|XP_004155867.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g01970-like [Cucumis sativus]
          Length = 404

 Score =  129 bits (325), Expect = 2e-28
 Identities = 66/119 (55%), Positives = 82/119 (68%)
 Frame = -2

Query: 524 GAQRVFDAIQFARISPDVKLCALLINAHRMAGQSDGARRVFENMRRAGLTPSDKCVALML 345
           GAQRVFDAIQ A I+PD KLC LLINA+ MAGQS  A+  F+NMRRAG+ PSDKC+AL L
Sbjct: 284 GAQRVFDAIQLAAITPDEKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALAL 343

Query: 344 AAYXXXXXXXXXXXXXXXXXXDNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEI 168
           +AY                  DN ++GKE S++L  W +RLGVV+EV +VL+EY  KE+
Sbjct: 344 SAYEKENRLNSALELLIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEV 402


>ref|NP_171699.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264110|sp|Q9LPC4.1|PPR1_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g01970 gi|8570448|gb|AAF76475.1|AC020622_9 Contains
           similarity to an unknown protein gi|AAD26479 from
           Arabidopsis thaliana BAC gb|AC007169 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
           gi|34098825|gb|AAQ56795.1| At1g01970 [Arabidopsis
           thaliana] gi|110735700|dbj|BAE99830.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332189240|gb|AEE27361.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 409

 Score =  123 bits (308), Expect = 2e-26
 Identities = 62/118 (52%), Positives = 83/118 (70%)
 Frame = -2

Query: 524 GAQRVFDAIQFARISPDVKLCALLINAHRMAGQSDGARRVFENMRRAGLTPSDKCVALML 345
           GA+RVFDA+Q A I+PDVKLC LLINA+ ++GQS  AR  FENMR+AG+  +DKCVAL+L
Sbjct: 288 GAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVL 347

Query: 344 AAYXXXXXXXXXXXXXXXXXXDNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKE 171
           AAY                  D+ +LGKE S VL  WF++LGVV+EV L+L+E+++ +
Sbjct: 348 AAYEKEEKLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQ 405


>ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|222861503|gb|EEE99045.1|
           predicted protein [Populus trichocarpa]
          Length = 407

 Score =  122 bits (306), Expect = 3e-26
 Identities = 65/116 (56%), Positives = 77/116 (66%)
 Frame = -2

Query: 524 GAQRVFDAIQFARISPDVKLCALLINAHRMAGQSDGARRVFENMRRAGLTPSDKCVALML 345
           GAQRVFDAIQ A I PD + CA+L+NA+ MAGQS  A   FENM RAG+ P+D+CVAL+L
Sbjct: 291 GAQRVFDAIQLAGIPPDDRTCAVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVL 350

Query: 344 AAYXXXXXXXXXXXXXXXXXXDNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAA 177
           AAY                  +  ++GKE SEVL  WF RLGVV EV LVL+EYAA
Sbjct: 351 AAYEKENKLNQALDFLIGLEREKLIIGKEASEVLAEWFGRLGVVKEVELVLREYAA 406