BLASTX nr result
ID: Coptis23_contig00039228
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00039228
(521 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi... 262 2e-68
emb|CBI24193.3| unnamed protein product [Vitis vinifera] 262 2e-68
emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera] 262 2e-68
ref|XP_002310674.1| predicted protein [Populus trichocarpa] gi|2... 254 7e-66
ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containi... 243 1e-62
>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 262 bits (669), Expect = 2e-68
Identities = 124/173 (71%), Positives = 145/173 (83%)
Frame = +1
Query: 1 LLSACNHGGLVEEGLAHYASMTKEFGVPPGIEHCVCLIDLLGRSGRLNDAEKFVKEMPVP 180
LLSACNHGGLV+EGLA+Y SMT+EFGV PGIEHCVC+IDLLGRSGRL+ AE F+KEMPVP
Sbjct: 1459 LLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVP 1518
Query: 181 PNDLVWRSLLSASRTHNNMDLGRKAANHLLELDPSDDSAYVLLSNVCAVNGLWEDVDNIR 360
PNDL WRSLL+A R H N++L RK A HLLELDPSDDSAYVL SNVCA +G WEDV+N+R
Sbjct: 1519 PNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLR 1578
Query: 361 RRMTSSKIKKQPACSWVKVNNKVSSFKIGDQSHPQAVQIHGKLKDLKMMIKEA 519
+ M S+ IKKQPACSWVK+ +KV SF +G++ HPQA +I KL +L M KEA
Sbjct: 1579 KEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEA 1631
Score = 97.4 bits (241), Expect = 1e-18
Identities = 46/142 (32%), Positives = 78/142 (54%)
Frame = +1
Query: 1 LLSACNHGGLVEEGLAHYASMTKEFGVPPGIEHCVCLIDLLGRSGRLNDAEKFVKEMPVP 180
LL AC+H GL EG + +M ++ + P EH C++DL R G L +A + ++ +
Sbjct: 441 LLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIK 500
Query: 181 PNDLVWRSLLSASRTHNNMDLGRKAANHLLELDPSDDSAYVLLSNVCAVNGLWEDVDNIR 360
N +W ++L AS + M LG++AA++L + P + YV+L+++ + GLW+D IR
Sbjct: 501 HNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIR 560
Query: 361 RRMTSSKIKKQPACSWVKVNNK 426
+ M KK S+ + K
Sbjct: 561 KLMEERSTKKNAGYSFFQATKK 582
>emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 262 bits (669), Expect = 2e-68
Identities = 124/173 (71%), Positives = 145/173 (83%)
Frame = +1
Query: 1 LLSACNHGGLVEEGLAHYASMTKEFGVPPGIEHCVCLIDLLGRSGRLNDAEKFVKEMPVP 180
LLSACNHGGLV+EGLA+Y SMT+EFGV PGIEHCVC+IDLLGRSGRL+ AE F+KEMPVP
Sbjct: 818 LLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVP 877
Query: 181 PNDLVWRSLLSASRTHNNMDLGRKAANHLLELDPSDDSAYVLLSNVCAVNGLWEDVDNIR 360
PNDL WRSLL+A R H N++L RK A HLLELDPSDDSAYVL SNVCA +G WEDV+N+R
Sbjct: 878 PNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLR 937
Query: 361 RRMTSSKIKKQPACSWVKVNNKVSSFKIGDQSHPQAVQIHGKLKDLKMMIKEA 519
+ M S+ IKKQPACSWVK+ +KV SF +G++ HPQA +I KL +L M KEA
Sbjct: 938 KEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEA 990
>emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 262 bits (669), Expect = 2e-68
Identities = 124/173 (71%), Positives = 145/173 (83%)
Frame = +1
Query: 1 LLSACNHGGLVEEGLAHYASMTKEFGVPPGIEHCVCLIDLLGRSGRLNDAEKFVKEMPVP 180
LLSACNHGGLV+EGLA+Y SMT+EFGV PGIEHCVC+IDLLGRSGRL+ AE F+KEMPVP
Sbjct: 809 LLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVP 868
Query: 181 PNDLVWRSLLSASRTHNNMDLGRKAANHLLELDPSDDSAYVLLSNVCAVNGLWEDVDNIR 360
PNDL WRSLL+A R H N++L RK A HLLELDPSDDSAYVL SNVCA +G WEDV+N+R
Sbjct: 869 PNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLR 928
Query: 361 RRMTSSKIKKQPACSWVKVNNKVSSFKIGDQSHPQAVQIHGKLKDLKMMIKEA 519
+ M S+ IKKQPACSWVK+ +KV SF +G++ HPQA +I KL +L M KEA
Sbjct: 929 KEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEA 981
>ref|XP_002310674.1| predicted protein [Populus trichocarpa] gi|222853577|gb|EEE91124.1|
predicted protein [Populus trichocarpa]
Length = 908
Score = 254 bits (648), Expect = 7e-66
Identities = 119/173 (68%), Positives = 144/173 (83%)
Frame = +1
Query: 1 LLSACNHGGLVEEGLAHYASMTKEFGVPPGIEHCVCLIDLLGRSGRLNDAEKFVKEMPVP 180
LLSAC+HGG+VEEGLA+Y SM KEFG+P I HCVC+IDLLGRSGR +AE F+KEMPV
Sbjct: 643 LLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVS 702
Query: 181 PNDLVWRSLLSASRTHNNMDLGRKAANHLLELDPSDDSAYVLLSNVCAVNGLWEDVDNIR 360
P D VWRSLL+A +TH N++LGRKA +LL+LDPSDDSAYVL SN+CA G WEDV+ IR
Sbjct: 703 PTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIR 762
Query: 361 RRMTSSKIKKQPACSWVKVNNKVSSFKIGDQSHPQAVQIHGKLKDLKMMIKEA 519
R+M +KIKK+PACSWVK+ NK+S F +GD SHPQA +I+ KL++LK MIKEA
Sbjct: 763 RQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKEA 815
>ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Glycine max]
Length = 934
Score = 243 bits (620), Expect = 1e-62
Identities = 110/173 (63%), Positives = 144/173 (83%)
Frame = +1
Query: 1 LLSACNHGGLVEEGLAHYASMTKEFGVPPGIEHCVCLIDLLGRSGRLNDAEKFVKEMPVP 180
LLSAC+HGGLV+EGLA+++SM+ +FGVP GIEHCVC+IDLLGR+G+L +AE F+ +MPVP
Sbjct: 669 LLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVP 728
Query: 181 PNDLVWRSLLSASRTHNNMDLGRKAANHLLELDPSDDSAYVLLSNVCAVNGLWEDVDNIR 360
P DLVWRSLL+A + H N++L RKAA+ L ELD SDDSAYVL SNVCA W DV+N+R
Sbjct: 729 PTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVR 788
Query: 361 RRMTSSKIKKQPACSWVKVNNKVSSFKIGDQSHPQAVQIHGKLKDLKMMIKEA 519
++M S IKK+PACSWVK+ N+V++F +GDQ HPQ +I+ KL++LK +I+EA
Sbjct: 789 KQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREA 841