BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039146
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36559.3| unnamed protein product [Vitis vinifera]              120   9e-26
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   120   9e-26
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   119   3e-25
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   119   3e-25
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   116   2e-24

>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  120 bits (302), Expect = 9e-26
 Identities = 62/74 (83%), Positives = 66/74 (89%)
 Frame = +3

Query: 90  LEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCKKDPATDPAAALAKVLINQVDRKLVKQ 269
           LEA+AVNLVAG+KPADVYSEIA+RV  IM RD  KDPATDP A LAKVLI QVDRKLVKQ
Sbjct: 526 LEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQ 585

Query: 270 TVMTSVYGVTYVGA 311
           TVMTSVYGVTY+GA
Sbjct: 586 TVMTSVYGVTYIGA 599


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  120 bits (302), Expect = 9e-26
 Identities = 62/74 (83%), Positives = 66/74 (89%)
 Frame = +3

Query: 90  LEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCKKDPATDPAAALAKVLINQVDRKLVKQ 269
           LEA+AVNLVAG+KPADVYSEIA+RV  IM RD  KDPATDP A LAKVLI QVDRKLVKQ
Sbjct: 697 LEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQ 756

Query: 270 TVMTSVYGVTYVGA 311
           TVMTSVYGVTY+GA
Sbjct: 757 TVMTSVYGVTYIGA 770


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/74 (81%), Positives = 68/74 (91%)
 Frame = +3

Query: 90  LEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCKKDPATDPAAALAKVLINQVDRKLVKQ 269
           LEAAAVNLVAG+KPADVYSEIA+RV +IM RD  KDP T+P A+LAK+LI+QVDRKLVKQ
Sbjct: 693 LEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQ 752

Query: 270 TVMTSVYGVTYVGA 311
           TVMTSVYGVTY+GA
Sbjct: 753 TVMTSVYGVTYIGA 766


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/74 (81%), Positives = 68/74 (91%)
 Frame = +3

Query: 90  LEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCKKDPATDPAAALAKVLINQVDRKLVKQ 269
           LEAAAVNLVAG+KPADVYSEIA+RV +IM RD  KDP T+P A+LAK+LI+QVDRKLVKQ
Sbjct: 693 LEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQ 752

Query: 270 TVMTSVYGVTYVGA 311
           TVMTSVYGVTY+GA
Sbjct: 753 TVMTSVYGVTYIGA 766


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score =  116 bits (290), Expect = 2e-24
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = +3

Query: 75  LYVFQLEAAAVNLVAGDKPADVYSEIASRVLSIMTRDCKKDPATDPAAALAKVLINQVDR 254
           L + Q EAAAVNLVAG+KPADVY+EIA+RV  ++ RD  KDPAT+P A LAK+LI+QVDR
Sbjct: 681 LPIHQPEAAAVNLVAGEKPADVYTEIAARVHELIERDSNKDPATNPNALLAKLLIDQVDR 740

Query: 255 KLVKQTVMTSVYGVTYVGA 311
           KLVKQTVMTSVYGVTYVGA
Sbjct: 741 KLVKQTVMTSVYGVTYVGA 759