BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039120
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003608278.1| Pentatricopeptide repeat-containing protein ...   129   2e-28
ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   128   5e-28
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar...   119   3e-25
ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containi...   118   4e-25
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   118   4e-25

>ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359684|gb|ABD32353.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355509333|gb|AES90475.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  129 bits (325), Expect = 2e-28
 Identities = 65/117 (55%), Positives = 85/117 (72%)
 Frame = -2

Query: 363 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXX 184
           F DMQM D +LGLP+PN++TFN+ML+GFC+E M+EEA  LVE+MK+ G F +LESY    
Sbjct: 277 FRDMQM-DGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWL 335

Query: 183 XXXXXXXXXLKARSVLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELMRNN 13
                    L+ RSVL EM E GI PNIYSYNI+++GLC+  M+ DAR +M+LM +N
Sbjct: 336 LGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSN 392



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/103 (29%), Positives = 56/103 (54%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           PN+ ++NI+++G C+  M+ +A  L++ M  +G++    +Y              +A+++
Sbjct: 361 PNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAI 420

Query: 138 LQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELMRNNA 10
           L EM  KG  PN Y+ N L+N L K+G   +A  M++ M   +
Sbjct: 421 LNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKS 463



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
 Frame = -2

Query: 315 NLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSVL 136
           N + +N ++  FCK+ M +EAE LVE M E G+   + ++              +A  + 
Sbjct: 218 NRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIF 277

Query: 135 QEMTEKGI----SPNIYSYNILINGLCKKGMIYDARLMMELMRNNARLM 1
           ++M   G      PN+ ++N+++ G C++GM+ +AR ++E M+     +
Sbjct: 278 RDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFV 326



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/99 (28%), Positives = 52/99 (52%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           P+ +T++  +  FCK+  +  A  +++ M+ +G   TL++Y              +   +
Sbjct: 558 PDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGL 617

Query: 138 LQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
           + EM E+GI P+I +YN +IN LC+ G   DA  ++  M
Sbjct: 618 MDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEM 656


>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
           protein product [Vitis vinifera]
          Length = 878

 Score =  128 bits (321), Expect = 5e-28
 Identities = 65/114 (57%), Positives = 83/114 (72%)
 Frame = -2

Query: 363 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXX 184
           F DMQ+ D++LGLPRPN+ TFN+MLEGFCKE MLEEA+ LVESMK +G    LESY    
Sbjct: 279 FRDMQI-DEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWL 337

Query: 183 XXXXXXXXXLKARSVLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
                    L+A+  L+EM +KGI PNIYS+N +++GLCK G+I DAR++M LM
Sbjct: 338 LGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLM 391



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
 Frame = -2

Query: 321 RPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARS 142
           +PN + +N ++  FC+E   EEAE LVE M+EDG+F  + ++             L+A  
Sbjct: 218 QPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASR 277

Query: 141 VLQEM---TEKGI-SPNIYSYNILINGLCKKGMIYDARLMMELMRNNARLM 1
           + ++M    E G+  PNI ++N+++ G CK+GM+ +A+ ++E M+ N  LM
Sbjct: 278 IFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLM 328



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/103 (30%), Positives = 57/103 (55%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           PN+ +FN +++G CK  ++ +A +++  M   G+     +Y             LKA ++
Sbjct: 363 PNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNI 422

Query: 138 LQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELMRNNA 10
           L EM  +G SPN Y+ NIL++ L K+G I++A  +++ M   +
Sbjct: 423 LHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERS 465



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/99 (29%), Positives = 53/99 (53%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           P+ I ++  +  FCK   +  A  +++ M++ G   +L++Y              +   +
Sbjct: 561 PDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGL 620

Query: 138 LQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
           L +M EKGI+PNI +YN +I+ LC+ G I DA  +++ M
Sbjct: 621 LDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEM 659


>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|330251496|gb|AEC06590.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  119 bits (297), Expect = 3e-25
 Identities = 58/117 (49%), Positives = 86/117 (73%)
 Frame = -2

Query: 363 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXX 184
           FSDM++ D+ LGLPRPN IT+N+ML+GFCK  +LE+A+ L ES++E+    +L+SY    
Sbjct: 275 FSDMEL-DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWL 333

Query: 183 XXXXXXXXXLKARSVLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELMRNN 13
                    ++A +VL++MT+KGI P+IYSYNIL++GLCK GM+ DA+ ++ LM+ N
Sbjct: 334 QGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRN 390



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 36/110 (32%), Positives = 58/110 (52%)
 Frame = -2

Query: 351 QMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXX 172
           QM D  +G   P++ ++NI+++G CK  ML +A+ +V  MK +G+     +Y        
Sbjct: 351 QMTDKGIG---PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYC 407

Query: 171 XXXXXLKARSVLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
                  A+S+LQEM      PN Y+ NIL++ L K G I +A  ++  M
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKM 457



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
 Frame = -2

Query: 321 RPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARS 142
           +P+ + +NI +  FCK+  +  A  +++ M++ G   +LE+Y              +   
Sbjct: 556 QPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHG 615

Query: 141 VLQEMTEKGISPNIYSYNILINGLCKKGMIYDA-RLMMELMRNN 13
           ++ EM EKGISPNI +YN  I  LC+   + DA  L+ E+M+ N
Sbjct: 616 LMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKN 659



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/93 (26%), Positives = 49/93 (52%)
 Frame = -2

Query: 321 RPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARS 142
           +PN  TF I++ G+CK  + ++   L+ +M+  G+      Y               +  
Sbjct: 179 KPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEK 238

Query: 141 VLQEMTEKGISPNIYSYNILINGLCKKGMIYDA 43
           ++++M E+G+ P+I ++N  I+ LCK+G + DA
Sbjct: 239 MVEKMREEGLVPDIVTFNSRISALCKEGKVLDA 271


>ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  118 bits (296), Expect = 4e-25
 Identities = 61/117 (52%), Positives = 80/117 (68%)
 Frame = -2

Query: 363 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXX 184
           F DMQM D +LGLPRPN++TFN+ML+GFCK  M+ +A  LVE+MK+ G F +LE Y    
Sbjct: 277 FRDMQM-DAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWL 335

Query: 183 XXXXXXXXXLKARSVLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELMRNN 13
                    L+AR VL EM  KGI PN Y+YNI+++GLC+  M+ DAR +M+LM  N
Sbjct: 336 MGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRN 392



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 33/99 (33%), Positives = 53/99 (53%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           PN  T+NIM++G C+  ML +A  L++ M  +G++    +Y              +A+SV
Sbjct: 361 PNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSV 420

Query: 138 LQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
           L EM   G  PN Y+ N L++ L K+G   +A  M++ M
Sbjct: 421 LHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKM 459



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
 Frame = -2

Query: 315 NLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSVL 136
           N + +N ++  FC+E M  EAE LVE M E G+   + ++             ++A  + 
Sbjct: 218 NRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIF 277

Query: 135 QEM---TEKGI-SPNIYSYNILINGLCKKGMIYDARLMMELMR 19
           ++M    E G+  PN+ ++N+++ G CK GM+ DAR ++E M+
Sbjct: 278 RDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMK 320



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/100 (30%), Positives = 52/100 (52%)
 Frame = -2

Query: 321 RPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARS 142
           RP+ +T++  +  FCK+  +  A  +++ M+ +G   TL++Y              +   
Sbjct: 557 RPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYG 616

Query: 141 VLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
           +  EM EKGISP+I +YN +I  LC+ G   DA  ++  M
Sbjct: 617 LKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEM 656


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  118 bits (296), Expect = 4e-25
 Identities = 63/120 (52%), Positives = 82/120 (68%)
 Frame = -2

Query: 363 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXX 184
           F DMQ+ D++LGLP PN+IT+ +ML GFCKE MLEEA+ LV++MK +  F  LESY    
Sbjct: 275 FRDMQI-DEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWL 333

Query: 183 XXXXXXXXXLKARSVLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELMRNNARL 4
                    L+A  VL+EM   GI P+IYSYNI+++GLCK GM+ DAR++M LM  N  L
Sbjct: 334 LGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGIL 393



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 33/110 (30%), Positives = 63/110 (57%), Gaps = 4/110 (3%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           PN + +N ++  FCKE    +AE LV+ M+EDG+   +E++             L+A  +
Sbjct: 215 PNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRI 274

Query: 138 LQEM---TEKGI-SPNIYSYNILINGLCKKGMIYDARLMMELMRNNARLM 1
            ++M    E G+  PN+ +Y +++ G CK+GM+ +A+ +++ M+ NA  +
Sbjct: 275 FRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFI 324



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/99 (29%), Positives = 54/99 (54%)
 Frame = -2

Query: 318 PNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARSV 139
           P++ ++NI+++G CK  ML +A +L+  M  +G+     +Y              +A ++
Sbjct: 359 PDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNL 418

Query: 138 LQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
           L EM     SPN Y+ N+L++ L K+G I +A  +++ M
Sbjct: 419 LHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKM 457



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 54/100 (54%)
 Frame = -2

Query: 321 RPNLITFNIMLEGFCKERMLEEAEVLVESMKEDGMFTTLESYXXXXXXXXXXXXXLKARS 142
           +P+   ++  +  FC+E  +  A  +++ M++ G   TL++Y              +   
Sbjct: 556 QPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYG 615

Query: 141 VLQEMTEKGISPNIYSYNILINGLCKKGMIYDARLMMELM 22
           ++ EM EKG+SP++ +YN ++N LC+ G I DA  +++ M
Sbjct: 616 LIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEM 655