BLASTX nr result

ID: Coptis23_contig00039083 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039083
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267915.2| PREDICTED: regulatory protein recX-like [Vit...    61   1e-07
emb|CBI39797.3| unnamed protein product [Vitis vinifera]               61   1e-07
ref|XP_002300573.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07
ref|XP_003579452.1| PREDICTED: regulatory protein recX-like [Bra...    59   5e-07
ref|XP_003519641.1| PREDICTED: regulatory protein recX-like [Gly...    57   1e-06

>ref|XP_002267915.2| PREDICTED: regulatory protein recX-like [Vitis vinifera]
          Length = 301

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 9   EKRKSRIIRWLQYRGFSWGVVNFILKKLESQ*P 107
           E RKSRIIRWLQYRGF+W VV+FILKKLESQ P
Sbjct: 268 ETRKSRIIRWLQYRGFTWAVVSFILKKLESQYP 300


>emb|CBI39797.3| unnamed protein product [Vitis vinifera]
          Length = 382

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 9   EKRKSRIIRWLQYRGFSWGVVNFILKKLESQ*P 107
           E RKSRIIRWLQYRGF+W VV+FILKKLESQ P
Sbjct: 349 ETRKSRIIRWLQYRGFTWAVVSFILKKLESQYP 381


>ref|XP_002300573.1| predicted protein [Populus trichocarpa] gi|222847831|gb|EEE85378.1|
           predicted protein [Populus trichocarpa]
          Length = 376

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/31 (80%), Positives = 29/31 (93%)
 Frame = +3

Query: 9   EKRKSRIIRWLQYRGFSWGVVNFILKKLESQ 101
           + RKSR+IRWLQYRGF+W VVNF+LKKLESQ
Sbjct: 343 DTRKSRLIRWLQYRGFNWDVVNFVLKKLESQ 373


>ref|XP_003579452.1| PREDICTED: regulatory protein recX-like [Brachypodium distachyon]
          Length = 282

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +3

Query: 9   EKRKSRIIRWLQYRGFSWGVVNFILKKLESQ*PP 110
           E R++RI+RWLQYRGFSWGV N I++KLE+Q PP
Sbjct: 249 ENRRARIVRWLQYRGFSWGVTNTIVRKLEAQHPP 282


>ref|XP_003519641.1| PREDICTED: regulatory protein recX-like [Glycine max]
          Length = 196

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 9   EKRKSRIIRWLQYRGFSWGVVNFILKKLESQ 101
           E RKSRI+RWLQYRGF W V+NFILKKL+ Q
Sbjct: 161 ETRKSRIVRWLQYRGFDWNVINFILKKLDRQ 191


Top