BLASTX nr result

ID: Coptis23_contig00039054 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039054
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]    69   4e-10
ref|XP_002299253.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10
ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selag...    55   8e-06

>emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
          Length = 566

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +3

Query: 255 ERCMKAKAMKPSKQLHAVFLATGMGMETRSLNSKLVGMYAGCGDMSSASAVFERMRKP 428
           ++C+K KA++P KQ+HA+ LA+ + M   S++SKLVGMYA CGD+ SA  V ER + P
Sbjct: 32  KKCLKCKALQPGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNP 89


>ref|XP_002299253.1| predicted protein [Populus trichocarpa] gi|222846511|gb|EEE84058.1|
           predicted protein [Populus trichocarpa]
          Length = 599

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = +3

Query: 240 LGAILERCMKAKAMKPSKQLHAVFLATGMGMETRSLNSKLVGMYAGCGDMSSASAVFERM 419
           +  +L++C+K K ++  KQ+HA  +  G  +   SLNSKLVGMYA CGD+ SA+ VF+R+
Sbjct: 27  IAGLLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRI 86

Query: 420 RKP 428
           R P
Sbjct: 87  RNP 89


>ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
           gi|300160347|gb|EFJ26965.1| hypothetical protein
           SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/60 (46%), Positives = 38/60 (63%)
 Frame = +3

Query: 249 ILERCMKAKAMKPSKQLHAVFLATGMGMETRSLNSKLVGMYAGCGDMSSASAVFERMRKP 428
           +L RC   +A+  + QLHA+ LATG  + +R L++KLV  Y  CGD+ SA AVF R   P
Sbjct: 37  LLHRCAAERALPQAHQLHALMLATG-ALRSRYLSNKLVQAYGQCGDVESAHAVFARQPDP 95


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