BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00039038
         (517 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    62   4e-08
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    61   8e-08
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    61   1e-07
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   2e-07
emb|CAN69926.1| hypothetical protein VITISV_027209 [Vitis vinifera]    57   1e-06

>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/105 (33%), Positives = 56/105 (53%)
 Frame = +1

Query: 202 RTINMITFQDDSIASTREKRRRVGALQEVYQFSSQAAPIPQTASRSSGDIAFTEADLNKV 381
           R IN IT    S      KR+R   +++++   +    +P   S +   I+F   D   +
Sbjct: 209 RVINAIT--GGSSLGVESKRQRKAYVRQIHHVGTSYQSVPPAYSNTV--ISFGPEDAEGI 264

Query: 382 CLPHNDALVVHVKISDWTVKRVLINPGSSCDILFYRTIKEMNMPK 516
             PH D LV+ V+I+   V+RVL++ GSS D+LFY   K+M +P+
Sbjct: 265 LFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPE 309


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/105 (34%), Positives = 55/105 (52%)
 Frame = +1

Query: 202 RTINMITFQDDSIASTREKRRRVGALQEVYQFSSQAAPIPQTASRSSGDIAFTEADLNKV 381
           R IN IT    S      KR+R   ++++    +    IP   S +   I+F   D   +
Sbjct: 43  RVINAIT--GGSSLGVESKRQRKAYVRQINHVGTSYQSIPPAYSNTV--ISFGPEDAEGI 98

Query: 382 CLPHNDALVVHVKISDWTVKRVLINPGSSCDILFYRTIKEMNMPK 516
             PH D LV+ V+I+   V+RVL++ GSS D+LFY   K+M +P+
Sbjct: 99  LFPHQDPLVISVEITQCEVQRVLVDGGSSADVLFYDAFKKMQIPE 143


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
 Frame = +1

Query: 64   HKLMTHREWSRSSPRHHQRDRSHARGSSNERSHHE------RR*HSFDRENHRTINMITF 225
            H     R+ +    +H  R      G+ ++R  +        +  + +    R IN IT 
Sbjct: 640  HSTEECRQMTHLLEKHVNRYEDKYEGARDQRGQNAIEAPQVMKIEAIEEVPKRVINAIT- 698

Query: 226  QDDSIASTREKRRRVGALQEVYQFSSQAAPIPQTASRSSGDIAFTEADLNKVCLPHNDAL 405
               S      KR+R   +++V    +     P   S++   I+F   D   +  PH D L
Sbjct: 699  -GGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTV--ISFGPEDAEGILFPHQDPL 755

Query: 406  VVHVKISDWTVKRVLINPGSSCDILFYRTIKEMNMPK 516
            VV V+I+   V+RVLI+ GSS D+LFY   K+M +P+
Sbjct: 756  VVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPE 792


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
 Frame = +1

Query: 64   HKLMTHREWSRSSPRHHQRDRSHARGSSNERSHHE------RR*HSFDRENHRTINMITF 225
            H     R+ +    +H  R  +   G+ ++R  +        +  + +    R IN IT 
Sbjct: 640  HSTEECRQMTHLLEKHVNRYENKYEGARDQRGQNAIKAPQVMKIEAIEEVPKRVINAIT- 698

Query: 226  QDDSIASTREKRRRVGALQEVYQFSSQAAPIPQTASRSSGDIAFTEADLNKVCLPHNDAL 405
               S      KR+R   +++V    +     P   S++   I+F   D   +  PH D L
Sbjct: 699  -GGSSLGVESKRQRKAYVRQVNHVGTIYQSKPPVYSKTV--ISFGPEDAEGILFPHQDPL 755

Query: 406  VVHVKISDWTVKRVLINPGSSCDILFYRTIKEMNMPK 516
            VV V+I+   V+RVLI+ GSS D+LFY   K+M +P+
Sbjct: 756  VVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPE 792


>emb|CAN69926.1| hypothetical protein VITISV_027209 [Vitis vinifera]
          Length = 549

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
 Frame = +1

Query: 1   QDLIEAGHIKHYTDIPDSDLRHKLMT--HREWSRSSPRHHQRDRSHARGSSNERSHHERR 174
           + LI+AGH+K Y     SD   K+ +  H   +  +P   +   ++  G  ++  H  RR
Sbjct: 287 EKLIKAGHLKQYLR---SDTERKITSQHHNAGAPKAPAAPKVVINYINGGPSDEEHDSRR 343

Query: 175 *HSFDRENHRTINMITFQDDSIASTREKRRRVGALQEVYQFSSQAAPIPQTASRSSGDIA 354
                 +  R +          ASTRE+      +  +    +   P P       G I 
Sbjct: 344 ------KRQRLL--------CAASTRER------INSIRPGLTGGGPHP-----IDGTII 378

Query: 355 FTEADLNKVCLPHNDALVVHVKISDWTVKRVLINPGSSCDILFYRTIKEM 504
           F   D N+   PH DAL++ ++I D+ V+R+L++PGSS D++    +  M
Sbjct: 379 FPLVDPNRTLQPHRDALILSLEIGDFEVRRILVDPGSSADLIQASVVSHM 428