BLASTX nr result
ID: Coptis23_contig00038946
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00038946
(530 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 242 3e-62
emb|CBI19766.3| unnamed protein product [Vitis vinifera] 242 3e-62
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi... 229 3e-58
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 229 3e-58
ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ... 218 6e-55
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Vitis vinifera]
Length = 1545
Score = 242 bits (617), Expect = 3e-62
Identities = 117/176 (66%), Positives = 140/176 (79%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
LF RME DG KR+ ASWNSLI+G LQNG KNKA RQMQS RPNS+TMLSILPAC
Sbjct: 479 LFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPAC 538
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
ANLVA KKVKEIHGC+LR L E SVAN LID YAKSGNI+YA+ +F+ + S+D+ISWN
Sbjct: 539 ANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWN 598
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGNSTLSS 3
+L+AGYVLHGC + ALD+F+QM +G KP+RGTF+SII A+ L+GMV++G SS
Sbjct: 599 SLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSS 654
Score = 100 bits (249), Expect = 1e-19
Identities = 53/148 (35%), Positives = 85/148 (57%)
Frame = -1
Query: 491 NVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPACANLVATKKVKEIH 312
+V +W S+ISG QN ++++A R+M PN +T+ S + ACA+L A KK E+H
Sbjct: 320 DVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELH 379
Query: 311 GCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPN 132
++ + V N+LID Y+KSG + AR VF+ + +DV +WN+++ GY G
Sbjct: 380 SVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCG 439
Query: 131 EALDIFEQMRLLGPKPNRGTFVSIILAY 48
+A D+F +M PN T+ ++I Y
Sbjct: 440 KAYDLFIKMHESDVPPNVVTWNAMISGY 467
Score = 76.6 bits (187), Expect = 2e-12
Identities = 43/154 (27%), Positives = 78/154 (50%)
Frame = -1
Query: 497 KRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPACANLVATKKVKE 318
+RN+ +W+++I + + + M P+ + IL AC N + K
Sbjct: 147 ERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKL 206
Query: 317 IHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGC 138
IH V+R + V+N+++ YAK G + AR FE++ RD +SWN+++ GY G
Sbjct: 207 IHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGE 266
Query: 137 PNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAG 36
++ +FE+M+ G +P T+ +I +Y +G
Sbjct: 267 LEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSG 300
>emb|CBI19766.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 242 bits (617), Expect = 3e-62
Identities = 117/176 (66%), Positives = 140/176 (79%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
LF RME DG KR+ ASWNSLI+G LQNG KNKA RQMQS RPNS+TMLSILPAC
Sbjct: 133 LFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPAC 192
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
ANLVA KKVKEIHGC+LR L E SVAN LID YAKSGNI+YA+ +F+ + S+D+ISWN
Sbjct: 193 ANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWN 252
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGNSTLSS 3
+L+AGYVLHGC + ALD+F+QM +G KP+RGTF+SII A+ L+GMV++G SS
Sbjct: 253 SLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSS 308
Score = 77.0 bits (188), Expect = 2e-12
Identities = 42/114 (36%), Positives = 66/114 (57%)
Frame = -1
Query: 389 PNSITMLSILPACANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVV 210
PN +T+ S + ACA+L A KK E+H ++ + V N+LID Y+KSG + AR V
Sbjct: 8 PNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRV 67
Query: 209 FEHLPSRDVISWNTLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAY 48
F+ + +DV +WN+++ GY G +A D+F +M PN T+ ++I Y
Sbjct: 68 FDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGY 121
>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 229 bits (583), Expect = 3e-58
Identities = 109/176 (61%), Positives = 137/176 (77%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
LFQ ME DG KRN ASWNSLI+G Q G+KNKA RQMQS + PNS+T+LSILPAC
Sbjct: 474 LFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPAC 533
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
AN++A KK+KEIHGCVLR L+ E +VAN+L+D YAKSGNI Y+R VF + S+D+I+WN
Sbjct: 534 ANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWN 593
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGNSTLSS 3
+++AGY+LHGC + A +F+QMR LG +PNRGT SII AYG+AGMV++G SS
Sbjct: 594 SIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSS 649
Score = 95.9 bits (237), Expect = 3e-18
Identities = 56/171 (32%), Positives = 98/171 (57%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
L ++ME+ G +V +W S+ISG Q+ + ++A F ++M PN+IT+ S AC
Sbjct: 303 LKKKMESVGLAP-DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSAC 361
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
A+L + + EIH ++ + ET V N+LID Y+K G + AR VF+ + +DV +WN
Sbjct: 362 ASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWN 421
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGN 18
+++ GY G +A ++F ++R PN T+ ++I +G ++ G+
Sbjct: 422 SMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMI-----SGCIQNGD 467
Score = 82.0 bits (201), Expect = 5e-14
Identities = 46/158 (29%), Positives = 77/158 (48%)
Frame = -1
Query: 509 DGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPACANLVATK 330
DG +RN+ +W+++I + + + M P++ IL AC N +
Sbjct: 138 DGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLE 197
Query: 329 KVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYV 150
VK IH V+R L ++N+++ A+ K G + AR F ++ RD +SWN ++AGY
Sbjct: 198 TVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYC 257
Query: 149 LHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAG 36
G +EA + + M G KP T+ +I +Y G
Sbjct: 258 QKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLG 295
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Cucumis sativus]
Length = 1463
Score = 229 bits (583), Expect = 3e-58
Identities = 109/176 (61%), Positives = 137/176 (77%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
LFQ ME DG KRN ASWNSLI+G Q G+KNKA RQMQS + PNS+T+LSILPAC
Sbjct: 474 LFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPAC 533
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
AN++A KK+KEIHGCVLR L+ E +VAN+L+D YAKSGNI Y+R VF + S+D+I+WN
Sbjct: 534 ANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWN 593
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGNSTLSS 3
+++AGY+LHGC + A +F+QMR LG +PNRGT SII AYG+AGMV++G SS
Sbjct: 594 SIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSS 649
Score = 95.9 bits (237), Expect = 3e-18
Identities = 56/171 (32%), Positives = 98/171 (57%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
L ++ME+ G +V +W S+ISG Q+ + ++A F ++M PN+IT+ S AC
Sbjct: 303 LKKKMESVGLAP-DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSAC 361
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
A+L + + EIH ++ + ET V N+LID Y+K G + AR VF+ + +DV +WN
Sbjct: 362 ASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWN 421
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGN 18
+++ GY G +A ++F ++R PN T+ ++I +G ++ G+
Sbjct: 422 SMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMI-----SGCIQNGD 467
Score = 82.0 bits (201), Expect = 5e-14
Identities = 46/158 (29%), Positives = 77/158 (48%)
Frame = -1
Query: 509 DGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPACANLVATK 330
DG +RN+ +W+++I + + + M P++ IL AC N +
Sbjct: 138 DGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLE 197
Query: 329 KVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYV 150
VK IH V+R L ++N+++ A+ K G + AR F ++ RD +SWN ++AGY
Sbjct: 198 TVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYC 257
Query: 149 LHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAG 36
G +EA + + M G KP T+ +I +Y G
Sbjct: 258 QKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLG 295
>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 887
Score = 218 bits (554), Expect = 6e-55
Identities = 105/175 (60%), Positives = 133/175 (76%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
LF+ +E DG TKRN ASWNSLISG +Q+GQK+KA + R MQ C PNS+T+LSILP C
Sbjct: 477 LFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVC 536
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
ANLVA+KKVKEIH +R L E SV+N LID+YAKSGN++Y++ +F L +D +SWN
Sbjct: 537 ANLVASKKVKEIHCFAVRRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWN 596
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQGNSTLS 6
++++ YVLHGC ALD+F QMR G +PNRGTF SI+LAYG AGMV++G S S
Sbjct: 597 SMLSSYVLHGCSESALDLFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFS 651
Score = 92.4 bits (228), Expect = 4e-17
Identities = 56/169 (33%), Positives = 89/169 (52%)
Frame = -1
Query: 530 LFQRMEADGTTKRNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPAC 351
L ++ME G +V +W S+ISG Q G+ + A L++M N+IT+ S AC
Sbjct: 306 LMRKMEWFGIAP-DVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASAC 364
Query: 350 ANLVATKKVKEIHGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWN 171
A L + EIH ++ L V N+LID Y K G++ A+ +F+ + RDV SWN
Sbjct: 365 AALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWN 424
Query: 170 TLMAGYVLHGCPNEALDIFEQMRLLGPKPNRGTFVSIILAYGLAGMVEQ 24
+++ GY G +A ++F +M+ PN T+ +I Y +G +Q
Sbjct: 425 SIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQ 473
Score = 69.7 bits (169), Expect = 3e-10
Identities = 37/153 (24%), Positives = 75/153 (49%)
Frame = -1
Query: 494 RNVASWNSLISGLLQNGQKNKAFRFLRQMQSCSTRPNSITMLSILPACANLVATKKVKEI 315
RN+ +W+++I G +N + M P+ + +L AC + + I
Sbjct: 146 RNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQACGKCRDLETGRLI 205
Query: 314 HGCVLRGRLQLETSVANTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCP 135
H V+R ++ + N+++ YAK G + A+ +F+ + RD ++WN +++G+ +G
Sbjct: 206 HSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKIFDCMDERDSVAWNAMISGFCQNGEI 265
Query: 134 NEALDIFEQMRLLGPKPNRGTFVSIILAYGLAG 36
+A F+ M+ G +P+ T+ +I Y G
Sbjct: 266 GQAQKYFDAMQKDGVEPSLVTWNILISCYNQLG 298