BLASTX nr result

ID: Coptis23_contig00038936 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038936
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM12783.1| putative expansin [Capsicum annuum]                    120   1e-25
ref|XP_002285891.1| PREDICTED: expansin-A11 [Vitis vinifera] gi|...   120   2e-25
ref|XP_002510588.1| Alpha-expansin 11 precursor, putative [Ricin...   117   8e-25
gb|AET25522.1| expansin [Chimonanthus praecox]                        116   2e-24
gb|AAG01875.1|AF291659_1 alpha-expansin 3 [Striga asiatica]           116   2e-24

>gb|AAM12783.1| putative expansin [Capsicum annuum]
          Length = 256

 Score =  120 bits (301), Expect = 1e-25
 Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 3/79 (3%)
 Frame = +2

Query: 26  MAMKIVLALIVVYGLISIV---DAFSASGWTKAHATFYCGSDASGTMGGACGYGNLYSTG 196
           MA   +LAL  ++GL +I+   +AFSASGW  AHATFY GSDASGTMGGACGYGNLYSTG
Sbjct: 1   MAKICILALGFIFGLFNILLSANAFSASGWMSAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 197 YGTRTAALSTALFNDGASC 253
           YGT TAALSTALFNDGASC
Sbjct: 61  YGTNTAALSTALFNDGASC 79


>ref|XP_002285891.1| PREDICTED: expansin-A11 [Vitis vinifera]
           gi|302141731|emb|CBI18934.3| unnamed protein product
           [Vitis vinifera]
          Length = 256

 Score =  120 bits (300), Expect = 2e-25
 Identities = 59/71 (83%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
 Frame = +2

Query: 44  LALI-VVYGLISIVDAFSASGWTKAHATFYCGSDASGTMGGACGYGNLYSTGYGTRTAAL 220
           LA++ V+    S V+AF+ASGWTKAHATFY GSDASGTMGGACGYGNLYSTGYGTRTAAL
Sbjct: 9   LAMVRVICYFFSNVNAFTASGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAAL 68

Query: 221 STALFNDGASC 253
           STALFNDGASC
Sbjct: 69  STALFNDGASC 79


>ref|XP_002510588.1| Alpha-expansin 11 precursor, putative [Ricinus communis]
           gi|223551289|gb|EEF52775.1| Alpha-expansin 11 precursor,
           putative [Ricinus communis]
          Length = 256

 Score =  117 bits (294), Expect = 8e-25
 Identities = 55/58 (94%), Positives = 56/58 (96%)
 Frame = +2

Query: 80  VDAFSASGWTKAHATFYCGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASC 253
           V+AFS SGWTKAHATFY GSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASC
Sbjct: 22  VNAFSPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASC 79


>gb|AET25522.1| expansin [Chimonanthus praecox]
          Length = 256

 Score =  116 bits (291), Expect = 2e-24
 Identities = 58/78 (74%), Positives = 65/78 (83%), Gaps = 1/78 (1%)
 Frame = +2

Query: 23  EMAMKIVLALIVVYGLISI-VDAFSASGWTKAHATFYCGSDASGTMGGACGYGNLYSTGY 199
           E    + LA++ +  L +I V+ FS SGWTKAHATFY GSDASGTMGGACG+GNLYSTGY
Sbjct: 2   ETQFALALAMMSLLCLETIGVEGFSPSGWTKAHATFYGGSDASGTMGGACGFGNLYSTGY 61

Query: 200 GTRTAALSTALFNDGASC 253
           GTRTAALSTALFNDGASC
Sbjct: 62  GTRTAALSTALFNDGASC 79


>gb|AAG01875.1|AF291659_1 alpha-expansin 3 [Striga asiatica]
          Length = 257

 Score =  116 bits (290), Expect = 2e-24
 Identities = 57/76 (75%), Positives = 66/76 (86%)
 Frame = +2

Query: 26  MAMKIVLALIVVYGLISIVDAFSASGWTKAHATFYCGSDASGTMGGACGYGNLYSTGYGT 205
           +++ IVLA +  + LI   + F+ASGWT+AHATFY GSDASGTMGGACGYGNLYSTGYGT
Sbjct: 6   VSLPIVLA-VCFFCLIINANGFTASGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGT 64

Query: 206 RTAALSTALFNDGASC 253
           RTAALSTALFN+GASC
Sbjct: 65  RTAALSTALFNNGASC 80


Top