BLASTX nr result

ID: Coptis23_contig00038901 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038901
         (251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315162.1| predicted protein [Populus trichocarpa] gi|2...    82   6e-14
ref|XP_002274030.1| PREDICTED: uncharacterized protein LOC100263...    77   1e-12
ref|XP_002312151.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|NP_181536.3| uncharacterized protein [Arabidopsis thaliana] ...    73   3e-11
dbj|BAH57264.1| AT2G40070 [Arabidopsis thaliana]                       73   3e-11

>ref|XP_002315162.1| predicted protein [Populus trichocarpa] gi|222864202|gb|EEF01333.1|
           predicted protein [Populus trichocarpa]
          Length = 567

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 50/93 (53%), Positives = 60/93 (64%), Gaps = 13/93 (13%)
 Frame = +2

Query: 5   LAMFPDM-----DGNSFLLAHNSKEFDASPGSKHGSSPIFKIVSSPKACK--------SV 145
           LA+F +M     + N+ LL +N++EFDA  GSKHG+ PIF I SS    K        S 
Sbjct: 37  LALFLEMKKREKEQNNLLLINNTEEFDAPLGSKHGTLPIFNISSSTPVRKTGADDFLNSE 96

Query: 146 GDKSDYDWLLTTPPVTPLFSSLEMESQQTNTSQ 244
            DK+DYDWLL TPP TPLF SLEMESQ+T  SQ
Sbjct: 97  NDKNDYDWLL-TPPGTPLFPSLEMESQKTIMSQ 128


>ref|XP_002274030.1| PREDICTED: uncharacterized protein LOC100263846 [Vitis vinifera]
           gi|297736627|emb|CBI25498.3| unnamed protein product
           [Vitis vinifera]
          Length = 545

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 48/93 (51%), Positives = 59/93 (63%), Gaps = 13/93 (13%)
 Frame = +2

Query: 5   LAMFPDM-----DGNSFLLAHNSKEFDASPGSKHGSSPIFKIVSSPKACKSV-------- 145
           LA+F +M     + +  LL  +S+EFDA  G+K GSSPIF I  SP   K+V        
Sbjct: 38  LALFLEMRKREKERSHLLLLQDSEEFDAPLGAKPGSSPIFNIAPSPPPRKTVADDFLNSD 97

Query: 146 GDKSDYDWLLTTPPVTPLFSSLEMESQQTNTSQ 244
            DK+DYDWLL TPP TPLF SLEMESQ+T  S+
Sbjct: 98  NDKNDYDWLL-TPPGTPLFPSLEMESQKTVMSR 129


>ref|XP_002312151.1| predicted protein [Populus trichocarpa] gi|222851971|gb|EEE89518.1|
           predicted protein [Populus trichocarpa]
          Length = 565

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 13/93 (13%)
 Frame = +2

Query: 5   LAMFPDM-----DGNSFLLAHNSKEFDASPGSKHGSSPIFKIVSSPKACK--------SV 145
           LA+F +M     + N+  L +N+++F+A  GS+HG+SPIF I SS  A K        S 
Sbjct: 37  LALFLEMKKREKEQNNLFLINNTEDFEAPFGSRHGTSPIFNISSSTPARKTGADDFLNSE 96

Query: 146 GDKSDYDWLLTTPPVTPLFSSLEMESQQTNTSQ 244
            DK DYDWLL TPP TPLF SLE+ESQ+T  SQ
Sbjct: 97  NDKHDYDWLL-TPPGTPLFPSLEVESQKTIMSQ 128


>ref|NP_181536.3| uncharacterized protein [Arabidopsis thaliana]
           gi|71143066|gb|AAZ23924.1| At2g40070 [Arabidopsis
           thaliana] gi|110742086|dbj|BAE98974.1| En/Spm-like
           transposon protein [Arabidopsis thaliana]
           gi|330254677|gb|AEC09771.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 607

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 9/84 (10%)
 Frame = +2

Query: 20  DMDGNSFLLAHNSKEFDASPGSKHGSSPIFKIVS----SPKAC-----KSVGDKSDYDWL 172
           + + ++ LL +N  EF+   GSKHG+SP+F I S    S KA       S GDK+DY+WL
Sbjct: 45  EKEQDNLLLNNNPDEFETPLGSKHGTSPVFNISSGAPPSRKAAPDDFLNSEGDKNDYEWL 104

Query: 173 LTTPPVTPLFSSLEMESQQTNTSQ 244
           L TPP TPLF SLEMES +T  SQ
Sbjct: 105 L-TPPGTPLFPSLEMESHRTMMSQ 127


>dbj|BAH57264.1| AT2G40070 [Arabidopsis thaliana]
          Length = 575

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 9/84 (10%)
 Frame = +2

Query: 20  DMDGNSFLLAHNSKEFDASPGSKHGSSPIFKIVS----SPKAC-----KSVGDKSDYDWL 172
           + + ++ LL +N  EF+   GSKHG+SP+F I S    S KA       S GDK+DY+WL
Sbjct: 13  EKEQDNLLLNNNPDEFETPLGSKHGTSPVFNISSGAPPSRKAAPDDFLNSEGDKNDYEWL 72

Query: 173 LTTPPVTPLFSSLEMESQQTNTSQ 244
           L TPP TPLF SLEMES +T  SQ
Sbjct: 73  L-TPPGTPLFPSLEMESHRTMMSQ 95


Top