BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038898
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    92   6e-17
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]          90   2e-16
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    89   5e-16
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    87   2e-15
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    82   4e-14

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 42/99 (42%), Positives = 58/99 (58%)
 Frame = -1

Query: 337 LVKSVGQSMSIYAMRVYALPSRINDTIDRLNWDF*WNGTTNSTS*HTISWEKLCKSKANG 158
           L K+V  S+ ++ M    LP    DT+DR +  F W  T      H +SW K+CK KA G
Sbjct: 655 LTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEG 714

Query: 157 GLGFRKAREMNLAMLAKHSWRLITDETSIWSRTFNSIYK 41
           G+G R AR+MN A++AK  WRL+ D+ S+W+R     YK
Sbjct: 715 GIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYK 753


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/98 (44%), Positives = 60/98 (61%)
 Frame = -1

Query: 337 LVKSVGQSMSIYAMRVYALPSRINDTIDRLNWDF*WNGTTNSTS*HTISWEKLCKSKANG 158
           ++KSV QS+S Y M  + LP    D I+++  +F W G  N +  H  SWEKLC+SK NG
Sbjct: 32  MIKSVLQSISTYIMGCFELPEGTCDRIEKMMCNFYWGGDRNGSKMHWRSWEKLCRSKRNG 91

Query: 157 GLGFRKAREMNLAMLAKHSWRLITDETSIWSRTFNSIY 44
           GLGFR+ +  N AMLAK  WRL+T   S+ +    + Y
Sbjct: 92  GLGFRRLKNFNRAMLAKQGWRLLTLPNSLAATILRAKY 129


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 39/99 (39%), Positives = 62/99 (62%)
 Frame = -1

Query: 337 LVKSVGQSMSIYAMRVYALPSRINDTIDRLNWDF*WNGTTNSTS*HTISWEKLCKSKANG 158
           L K+V  S+ I+ M    LP+ + + +D+++ +F W  T      H +SW+K+C+ KA G
Sbjct: 590 LTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAG 649

Query: 157 GLGFRKAREMNLAMLAKHSWRLITDETSIWSRTFNSIYK 41
           GLG R +++MN A+LAK  WRL+ D+ S+W+R     YK
Sbjct: 650 GLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYK 688


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 39/99 (39%), Positives = 60/99 (60%)
 Frame = -1

Query: 337 LVKSVGQSMSIYAMRVYALPSRINDTIDRLNWDF*WNGTTNSTS*HTISWEKLCKSKANG 158
           L K+V  S+ ++ M   ALP    D +D+++  F W  +      H ISW+++CK ++ G
Sbjct: 317 LTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEG 376

Query: 157 GLGFRKAREMNLAMLAKHSWRLITDETSIWSRTFNSIYK 41
           GLG RKA++MN A+L+K  WRLI D  S+W+R     Y+
Sbjct: 377 GLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYR 415


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 39/92 (42%), Positives = 55/92 (59%)
 Frame = -1

Query: 337 LVKSVGQSMSIYAMRVYALPSRINDTIDRLNWDF*WNGTTNSTS*HTISWEKLCKSKANG 158
           L KSV  S+ I+ M   ALP    D  DR++  F W  +T     H ++W K+  +K  G
Sbjct: 247 LTKSVLSSIPIHTMSTIALPKATLDGFDRISKSFVWGSSTEKKKQHLLAWNKIYCTKQAG 306

Query: 157 GLGFRKAREMNLAMLAKHSWRLITDETSIWSR 62
           GLG R +R MN A+LAK  WRL+ D++S+W+R
Sbjct: 307 GLGIRSSRAMNTALLAKIGWRLLQDKSSLWAR 338