BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038866
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
emb|CBI16904.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containi...   102   2e-20
emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]   102   2e-20
ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20

>ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  105 bits (261), Expect = 5e-21
 Identities = 56/101 (55%), Positives = 65/101 (64%)
 Frame = -2

Query: 303 PCSKIQFSQIYXXXXXXXXXXXVGKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAH 124
           P  K  FS I+            GKQAHA MI + F PTV+VTNCLIQMYIKCS L +A 
Sbjct: 39  PTKKKTFSHIFQECSDRKALCP-GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAF 97

Query: 123 KLFDQMPNRDTVSWNAMIFAYSSFGSDGLTLARSFFDRMPE 1
           K+FD MP RDTVSWNAM+F Y+  G  G  +A+  FD MPE
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIG--VAQKLFDAMPE 136



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMIFAYSS 55
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+  Y+ 
Sbjct: 597 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 656

Query: 54  FG 49
            G
Sbjct: 657 HG 658


>emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  105 bits (261), Expect = 5e-21
 Identities = 56/101 (55%), Positives = 65/101 (64%)
 Frame = -2

Query: 303 PCSKIQFSQIYXXXXXXXXXXXVGKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAH 124
           P  K  FS I+            GKQAHA MI + F PTV+VTNCLIQMYIKCS L +A 
Sbjct: 39  PTKKKTFSHIFQECSDRKALCP-GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAF 97

Query: 123 KLFDQMPNRDTVSWNAMIFAYSSFGSDGLTLARSFFDRMPE 1
           K+FD MP RDTVSWNAM+F Y+  G  G  +A+  FD MPE
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIG--VAQKLFDAMPE 136



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMIFAYSS 55
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+  Y+ 
Sbjct: 550 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 609

Query: 54  FG 49
            G
Sbjct: 610 HG 611


>ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
           gi|449528041|ref|XP_004171015.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  102 bits (255), Expect = 2e-20
 Identities = 46/77 (59%), Positives = 60/77 (77%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMIFAYSS 55
           GK+AHAHMI SGF PTV+VTNCLIQMY+KC  L YA+K+F++MP RD VSWN M+F  + 
Sbjct: 43  GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCA- 101

Query: 54  FGSDGLTLARSFFDRMP 4
            G+  + LA++ F+ MP
Sbjct: 102 -GAGRMELAQAVFNSMP 117



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMI--FAY 61
           GKQ HA MI    +  VY+T+ L+ MY KC  +  +  +F + P RD+V+WNAMI  FAY
Sbjct: 580 GKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAY 639

Query: 60  SSFGSDGLTL 31
              G + L L
Sbjct: 640 HGLGEEALEL 649



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/69 (43%), Positives = 37/69 (53%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMIFAYSS 55
           G Q H   I S     + V N ++ MY KC  L  A  LFD+M  RD VSWNA+I A   
Sbjct: 378 GLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQ 437

Query: 54  FGSDGLTLA 28
             S+G TL+
Sbjct: 438 NESEGKTLS 446


>emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  102 bits (255), Expect = 2e-20
 Identities = 55/100 (55%), Positives = 64/100 (64%)
 Frame = -2

Query: 303 PCSKIQFSQIYXXXXXXXXXXXVGKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAH 124
           P  K  FS I+            GKQAHA MI + F PTV+VTNCLIQMYIKCS L +A 
Sbjct: 39  PTKKKTFSHIFQECSDRKALCP-GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAF 97

Query: 123 KLFDQMPNRDTVSWNAMIFAYSSFGSDGLTLARSFFDRMP 4
           K+FD MP RDTVSWNAM+F Y+  G  G  +A+  FD MP
Sbjct: 98  KVFDGMPQRDTVSWNAMLFGYAGRGDIG--VAQKLFDAMP 135



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMIFAYSS 55
           GKQ HA +I        Y+++ L+ MY KC  +     +F++ PNRD V+WNAM+  Y+ 
Sbjct: 534 GKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQ 593

Query: 54  FG 49
            G
Sbjct: 594 HG 595


>ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/108 (47%), Positives = 66/108 (61%)
 Frame = -2

Query: 324 TFSTLIIPCSKIQFSQIYXXXXXXXXXXXVGKQAHAHMITSGFVPTVYVTNCLIQMYIKC 145
           TFS ++  CS ++                 GKQAHA MI + FVPT+YV NCL+Q Y K 
Sbjct: 8   TFSHILQKCSNLK-------------ALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKS 54

Query: 144 SILPYAHKLFDQMPNRDTVSWNAMIFAYSSFGSDGLTLARSFFDRMPE 1
           S + YA K+FD+MP+RD +SWN MIF Y+  G+ G   A+S FD MPE
Sbjct: 55  SNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMG--FAQSLFDTMPE 100



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/62 (38%), Positives = 37/62 (59%)
 Frame = -2

Query: 234 GKQAHAHMITSGFVPTVYVTNCLIQMYIKCSILPYAHKLFDQMPNRDTVSWNAMIFAYSS 55
           GKQ HA ++       VY+ + L+ MY KC  +  +  +F++ P RD V+W+AMI AY+ 
Sbjct: 561 GKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAY 620

Query: 54  FG 49
            G
Sbjct: 621 HG 622