BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038838
         (597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   128   7e-28
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   126   3e-27
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...   114   1e-23
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...   114   1e-23
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   107   1e-21

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  128 bits (322), Expect = 7e-28
 Identities = 65/145 (44%), Positives = 92/145 (63%)
 Frame = -1

Query: 543 GDFSNLRKVRTMQELHIS*GCLPEKYLGVLLTQGRVTNSIIYPVLDKIKKKLSSWKGRML 364
           G  S+ R  + +  +  + G  P  YLGV + +G+     + P++DKIK KLS+WK  +L
Sbjct: 377 GGISDARLQQLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASIL 436

Query: 363 FFQGRFILIKSVINSIPIYNMALYKWPSRLIKEAETCI*NFLWTGDA*KKKATTVS*EKV 184
              GR  LIKSV  S+ I+ + +Y WPS L+KE ETC  NF+W+GD  K+K  TV+ +K+
Sbjct: 437 SIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKL 496

Query: 183 CKPCSEGGLGIRRLKDINKAMLMKL 109
           CKP S+GGLGIR L  +N A  +KL
Sbjct: 497 CKPQSQGGLGIRSLSQLNAAGNLKL 521


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  126 bits (317), Expect = 3e-27
 Identities = 63/163 (38%), Positives = 96/163 (58%)
 Frame = -1

Query: 597 YQESSGQFMNKVKCKIFFGDFSNLRKVRTMQELHIS*GCLPEKYLGVLLTQGRVTNSIIY 418
           Y + SGQ MN  K  IF G  ++ R    +  L  + G LP  YLG  + +G+       
Sbjct: 453 YADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQ 512

Query: 417 PVLDKIKKKLSSWKGRMLFFQGRFILIKSVINSIPIYNMALYKWPSRLIKEAETCI*NFL 238
           P+ DK+K KL+ WK  +L   GR  L+KSV+ S+ ++ M++Y WP +++KE E  I NF+
Sbjct: 513 PIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFI 572

Query: 237 WTGDA*KKKATTVS*EKVCKPCSEGGLGIRRLKDINKAMLMKL 109
           W+GD  K+K  TV+  K+C    EGGLG++ L  +N+A  +K+
Sbjct: 573 WSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKI 615


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score =  114 bits (286), Expect = 1e-23
 Identities = 66/165 (40%), Positives = 89/165 (53%), Gaps = 1/165 (0%)
 Frame = -1

Query: 582 GQFMNKVKCKIFFGDFSNLRKVRTMQELHIS*-GCLPEKYLGVLLTQGRVTNSIIYPVLD 406
           GQ +N  K ++       LR+   ++ L +      P  YLGVL  QG      +   +D
Sbjct: 98  GQRVNLDKSEVLLSKSIPLRRALALRFLTVMRLDSFPLVYLGVLNFQGAPKAKWLKATMD 157

Query: 405 KIKKKLSSWKGRMLFFQGRFILIKSVINSIPIYNMALYKWPSRLIKEAETCI*NFLWTGD 226
            I  K  +WKGR LF  GR  LI SVI +  ++   +Y+WPS L+K  E  I NFLWTG 
Sbjct: 158 NILVKFDNWKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLWTGS 217

Query: 225 A*KKKATTVS*EKVCKPCSEGGLGIRRLKDINKAMLMKLA*KFLS 91
              KK  TV     CKP SEGG+G++RL  +N+ ML ++A KF S
Sbjct: 218 VSYKKLVTVKWGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYS 262


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score =  114 bits (286), Expect = 1e-23
 Identities = 59/155 (38%), Positives = 94/155 (60%)
 Frame = -1

Query: 573 MNKVKCKIFFGDFSNLRKVRTMQELHIS*GCLPEKYLGVLLTQGRVTNSIIYPVLDKIKK 394
           +N  K  +F G  S  +  + +  +  + G LP  YLGV + +G+     + P++DKI  
Sbjct: 2   VNPNKSTVFAGSISVSKLNQLINIIGFNHGTLPFTYLGVPIFKGKPKVIHLQPIVDKIIA 61

Query: 393 KLSSWKGRMLFFQGRFILIKSVINSIPIYNMALYKWPSRLIKEAETCI*NFLWTGDA*KK 214
           KLS+WK  +L   GR  ++KSVI S+  +++ +Y WP+ L+K+ E  I NF+W+GD  K+
Sbjct: 62  KLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKR 121

Query: 213 KATTVS*EKVCKPCSEGGLGIRRLKDINKAMLMKL 109
           K  TV+ +K+C+P  +GGL IR L  +N A  +KL
Sbjct: 122 KLVTVAWKKLCRPFDQGGLRIRSLIQLNSASNLKL 156


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  107 bits (268), Expect = 1e-21
 Identities = 59/160 (36%), Positives = 90/160 (56%)
 Frame = -1

Query: 561  KCKIFFGDFSNLRKVRTMQELHIS*GCLPEKYLGVLLTQGRVTNSIIYPVLDKIKKKLSS 382
            K  IF    S   K   +Q+     G LP KYLG+ L   R+T S   P+++KI+ +++S
Sbjct: 887  KSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITS 946

Query: 381  WKGRMLFFQGRFILIKSVINSIPIYNMALYKWPSRLIKEAETCI*NFLWTGDA*KKKATT 202
            W  R L F GR  LIKSV++SI  + +++++ P   ++E E     FLW+G     K   
Sbjct: 947  WTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAK 1006

Query: 201  VS*EKVCKPCSEGGLGIRRLKDINKAMLMKLA*KFLSEAD 82
            ++  +VCK   EGGLG++ LK+ N+  L+KL  + LS  D
Sbjct: 1007 IAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARD 1046