BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038818
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|2...   155   2e-36
ref|XP_002879637.1| pentatricopeptide repeat-containing protein ...   155   3e-36
ref|NP_181235.1| pentatricopeptide repeat-containing protein [Ar...   155   4e-36
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,...   151   5e-35
ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi...   151   6e-35

>ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|222863515|gb|EEF00646.1|
           predicted protein [Populus trichocarpa]
          Length = 492

 Score =  155 bits (393), Expect = 2e-36
 Identities = 70/104 (67%), Positives = 87/104 (83%)
 Frame = -1

Query: 314 LGHGRMAHCCVVRLGFHSYAYVGNGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFG 135
           LGHGRM H CV+R GFH++ Y+GNGLVNMYAKCG+LE S  AF DI +KDLVS+N+MLF 
Sbjct: 220 LGHGRMVHGCVIRHGFHAHVYIGNGLVNMYAKCGDLEGSNVAFNDIYEKDLVSFNSMLFA 279

Query: 134 FGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIER 3
           FGLHG   +AL++Y+DMV SG+KPD+VTFIGL + CSHSG I++
Sbjct: 280 FGLHGKGTQALQLYEDMVASGIKPDKVTFIGLFLTCSHSGLIDK 323



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/74 (35%), Positives = 46/74 (62%)
 Frame = -1

Query: 245 NGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFGFGLHGCAVKALKIYDDMVTSGLK 66
           N +++++ K G+  E+F +F  + DK++VSW +M+ G+  +G   +AL  +  M+ + L 
Sbjct: 142 NAIIDVFMKAGDTSEAFLSFQRMPDKNVVSWTSMITGYARNGYGEEALDFFVGMIRNCLL 201

Query: 65  PDRVTFIGLLMACS 24
           PD  TF  +L ACS
Sbjct: 202 PDDFTFGAVLHACS 215


>ref|XP_002879637.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325476|gb|EFH55896.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 624

 Score =  155 bits (392), Expect = 3e-36
 Identities = 68/104 (65%), Positives = 86/104 (82%)
 Frame = -1

Query: 314 LGHGRMAHCCVVRLGFHSYAYVGNGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFG 135
           LGHG+M H C++  GF  YAYVGN LVN+YAKCG+++ES RAF DI++KDLVSWN MLF 
Sbjct: 352 LGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFA 411

Query: 134 FGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIER 3
           FG+HG A +AL++YD+M+ SG+KPD VTFIGLL  CSHSG +E+
Sbjct: 412 FGVHGLADQALELYDNMIASGIKPDNVTFIGLLTTCSHSGLVEK 455


>ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g36980, mitochondrial; Flags: Precursor
           gi|4883614|gb|AAD31583.1| hypothetical protein
           [Arabidopsis thaliana] gi|330254236|gb|AEC09330.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 625

 Score =  155 bits (391), Expect = 4e-36
 Identities = 68/103 (66%), Positives = 85/103 (82%)
 Frame = -1

Query: 314 LGHGRMAHCCVVRLGFHSYAYVGNGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFG 135
           LGHG+M H C++  GF  YAYVGN LVN+YAKCG+++E+ RAF DI++KDLVSWN MLF 
Sbjct: 353 LGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFA 412

Query: 134 FGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIE 6
           FG+HG A +ALK+YD+M+ SG+KPD VTFIGLL  CSHSG +E
Sbjct: 413 FGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVE 455


>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score =  151 bits (382), Expect = 5e-35
 Identities = 71/103 (68%), Positives = 84/103 (81%)
 Frame = -1

Query: 314 LGHGRMAHCCVVRLGFHSYAYVGNGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFG 135
           LGHGRM H C +R GF +Y YVGNGLVNMYAKCG+L+ S  AF DI  KDLVS+NA+LF 
Sbjct: 351 LGHGRMVHGCAIRNGFSTYLYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFA 410

Query: 134 FGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIE 6
           FGLHG A +AL++Y+DM+T G KPD++TFIGLLM CSHSG IE
Sbjct: 411 FGLHGKASEALQLYEDMMTCGTKPDKMTFIGLLMTCSHSGLIE 453


>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  151 bits (381), Expect = 6e-35
 Identities = 68/104 (65%), Positives = 85/104 (81%)
 Frame = -1

Query: 314 LGHGRMAHCCVVRLGFHSYAYVGNGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFG 135
           LGHG+M H  ++  GFH+Y  VGNGLVNMYAKCG+++ S  AF +I  KDLVSWNAMLFG
Sbjct: 351 LGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFG 410

Query: 134 FGLHGCAVKALKIYDDMVTSGLKPDRVTFIGLLMACSHSGQIER 3
            G+HG A +AL++Y++MV SG+KPD+VTFIGLLM CSHSG IE+
Sbjct: 411 LGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEK 454



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/88 (32%), Positives = 46/88 (52%)
 Frame = -1

Query: 266 HSYAYVGNGLVNMYAKCGNLEESFRAFTDISDKDLVSWNAMLFGFGLHGCAVKALKIYDD 87
           HS+ +     +   AK G +  + R F ++  KD V+WNAML  +   G   +AL ++  
Sbjct: 2   HSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH 61

Query: 86  MVTSGLKPDRVTFIGLLMACSHSGQIER 3
           M  +  +PDR TF   L AC+  G++ R
Sbjct: 62  MRIANSRPDRFTFTATLSACAGLGELRR 89