BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038655
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containi...   228   5e-58
emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]   228   5e-58
ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containi...   225   3e-57
ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containi...   221   4e-56
ref|XP_002298341.1| predicted protein [Populus trichocarpa] gi|2...   218   3e-55

>ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  228 bits (580), Expect = 5e-58
 Identities = 108/162 (66%), Positives = 129/162 (79%)
 Frame = +2

Query: 23  GLKPNLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCNNEA 202
           G+KPN+V+WN LIAGFS V D +M  ++ ++M   G+EPDVVSWTS+ISGFVQNF N+E 
Sbjct: 224 GVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEG 283

Query: 203 FLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDM 382
           F  FK M+  G  P+S TISSLLPAC  VA+L+HGKEIH YA+V GVE D++V S LVDM
Sbjct: 284 FDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDM 343

Query: 383 YAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
           YAKCGYI EA  LF  M ERNTVTWNS+IFG+ANHGYCNEA+
Sbjct: 344 YAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAI 385



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 42/138 (30%), Positives = 72/138 (52%)
 Frame = +2

Query: 95  ALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCNNEAFLMFKMMMGAGVWPTSFTISSLLP 274
           A KL   +P   I      W  +     +     EA   F  M   G+ P  F + S+L 
Sbjct: 81  ARKLFDKIPNTNIR----RWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILK 136

Query: 275 ACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDMYAKCGYIFEATKLFNKMRERNTVT 454
           AC  ++D + G+ +H   L    E D ++ S L+ MY+KCG++ +A ++F+ + +++ V 
Sbjct: 137 ACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVV 196

Query: 455 WNSMIFGFANHGYCNEAL 508
            N+M+ G+A HG+ +EAL
Sbjct: 197 MNAMVSGYAQHGFVHEAL 214


>emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  228 bits (580), Expect = 5e-58
 Identities = 108/162 (66%), Positives = 129/162 (79%)
 Frame = +2

Query: 23   GLKPNLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCNNEA 202
            G+KPN+V+WN LIAGFS V D +M  ++ ++M   G+EPDVVSWTS+ISGFVQNF N+E 
Sbjct: 1000 GVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEG 1059

Query: 203  FLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDM 382
            F  FK M+  G  P+S TISSLLPAC  VA+L+HGKEIH YA+V GVE D++V S LVDM
Sbjct: 1060 FDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDM 1119

Query: 383  YAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
            YAKCGYI EA  LF  M ERNTVTWNS+IFG+ANHGYCNEA+
Sbjct: 1120 YAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAI 1161



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 42/138 (30%), Positives = 72/138 (52%)
 Frame = +2

Query: 95   ALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCNNEAFLMFKMMMGAGVWPTSFTISSLLP 274
            A KL   +P   I      W  +     +     EA   F  M   G+ P  F + S+L 
Sbjct: 857  ARKLFDKIPNTNIR----RWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILK 912

Query: 275  ACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDMYAKCGYIFEATKLFNKMRERNTVT 454
            AC  ++D + G+ +H   L    E D ++ S L+ MY+KCG++ +A ++F+ + +++ V 
Sbjct: 913  ACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVV 972

Query: 455  WNSMIFGFANHGYCNEAL 508
             N+M+ G+A HG+ +EAL
Sbjct: 973  MNAMVSGYAQHGFVHEAL 990



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
 Frame = +2

Query: 140 DVVSWTSIISGFVQNFCNNEAFLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIH 319
           +++SWT+ I+GF Q+    +A   F MM  +G+ P  FT S +L +C  V D   G+  H
Sbjct: 279 NIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFH 338

Query: 320 CYALVTGVEVDIFVCSTLVDMYAKCGYIFEATKLFNKM-RERNTVTWNSMIFGF 478
              +  G+   +FV + ++DMY+  G + EA K F +M R  + V+WN++I G+
Sbjct: 339 TQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGY 392



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
 Frame = +2

Query: 47  WNALIAGFSLVSDDAMALKLLKMMPVEG------------IEPDVVSWTSIISGFVQNFC 190
           W+  +    L SD+ +   L+ M    G               D  +   +IS + +N  
Sbjct: 135 WHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGF 194

Query: 191 NNEAFLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCST 370
             +AF +F  +   G  P  +T S++L  C T++ ++ GK++H + +      +  V + 
Sbjct: 195 FVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNA 254

Query: 371 LVDMYAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
           L+ +Y+KCG + EA  +F  +R+RN ++W + I GF  HG   +AL
Sbjct: 255 LLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKAL 300



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 44/156 (28%), Positives = 81/156 (51%)
 Frame = +2

Query: 23  GLKPNLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCNNEA 202
           G+   +    A+I  +S + +   A K  K M   G     VSW ++I+G+V N    +A
Sbjct: 345 GMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM---GRAASNVSWNALIAGYVLNEKIEKA 401

Query: 203 FLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDM 382
              F  M+   V    FT S++  AC++   L    +IH   + + VE ++ V S+L++ 
Sbjct: 402 MEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEA 461

Query: 383 YAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHG 490
           Y +CG +  A ++F ++ + + V+WNS+I  ++ +G
Sbjct: 462 YTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNG 497



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/91 (32%), Positives = 52/91 (57%)
 Frame = +2

Query: 233 GVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDMYAKCGYIFEA 412
           G +P    + S L  C     ++ G+  HC+ +  G+  D FVC++L+DMYAKCG +  A
Sbjct: 108 GGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 413 TKLFNKMRERNTVTWNSMIFGFANHGYCNEA 505
            ++++KM   +  T N +I  +A +G+  +A
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQA 198


>ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  225 bits (574), Expect = 3e-57
 Identities = 108/165 (65%), Positives = 131/165 (79%)
 Frame = +2

Query: 14  ELIGLKPNLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCN 193
           +L+GLKPN+VTWN+LI+GFS   D     ++ ++M  +G+EPDVVSWTS+ISGFVQNF N
Sbjct: 223 KLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRN 282

Query: 194 NEAFLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTL 373
            EAF  FK M+  G  PTS TIS+LLPACAT A +  G+EIH YALVTGVE DI+V S L
Sbjct: 283 KEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSAL 342

Query: 374 VDMYAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
           VDMYAKCG+I EA  LF++M E+NTVTWNS+IFGFANHGYC EA+
Sbjct: 343 VDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAI 387



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
 Frame = +2

Query: 35  NLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCNNEAFLMF 214
           N+V  N L++ ++     + A KL   +P   +      W ++I    +    + A  +F
Sbjct: 62  NVVASN-LVSFYTCCGQLSHARKLFDKIPTTNVR----RWIALIGSCARCGFYDHALAVF 116

Query: 215 KMMMGA-GVWPTS-FTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDMYA 388
             M    G+ P   F I S+L AC  V D   G++IH + L    E+D FV S+L+ MY+
Sbjct: 117 SEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYS 176

Query: 389 KCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
           KC  + +A K+F+ M  ++TV  N+++ G+   G  NEAL
Sbjct: 177 KCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEAL 216


>ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
           gi|449496662|ref|XP_004160192.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
          Length = 547

 Score =  221 bits (564), Expect = 4e-56
 Identities = 104/165 (63%), Positives = 129/165 (78%)
 Frame = +2

Query: 14  ELIGLKPNLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCN 193
           +++G+KPNLVTWN L+ GFS + ++ M  +L K M   GIEPDVVSWTS+ISGFVQNF N
Sbjct: 222 QVLGIKPNLVTWNTLVTGFSQIGEEEMVRELFKEMEANGIEPDVVSWTSVISGFVQNFRN 281

Query: 194 NEAFLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTL 373
            EAF  F+ M+ AG  PTS TISSLLPACA+V + + GKEIH ++L  GVE D++V + L
Sbjct: 282 EEAFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSLALGVEKDVYVRTAL 341

Query: 374 VDMYAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
           VDMYAKCGY +EA  LF +M ERN+ TWNSMIFG+ANHGYCNEA+
Sbjct: 342 VDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYCNEAI 386



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/119 (33%), Positives = 68/119 (57%)
 Frame = +2

Query: 152 WTSIISGFVQNFCNNEAFLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYAL 331
           W  +I  + +     EA  +F  +   G+ P+ + I S+L AC  +++   G+++H   L
Sbjct: 97  WIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLIL 156

Query: 332 VTGVEVDIFVCSTLVDMYAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
              +E D +VCS L+DMYAK G + +A ++F  M  ++ V  N+M+ G+A+HG   EAL
Sbjct: 157 KNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEAL 215


>ref|XP_002298341.1| predicted protein [Populus trichocarpa] gi|222845599|gb|EEE83146.1|
           predicted protein [Populus trichocarpa]
          Length = 429

 Score =  218 bits (556), Expect = 3e-55
 Identities = 103/165 (62%), Positives = 131/165 (79%)
 Frame = +2

Query: 14  ELIGLKPNLVTWNALIAGFSLVSDDAMALKLLKMMPVEGIEPDVVSWTSIISGFVQNFCN 193
           E +G+KPN++TWN+LI+GF+   DDAM  K+ ++M   G+EPDV+SWTS+ISG VQNF N
Sbjct: 103 EKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRN 162

Query: 194 NEAFLMFKMMMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTL 373
             AF  FK M+G G  PTS TIS++L ACAT+A+++ G+EIH YA+V  VE DI+V S L
Sbjct: 163 EAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSAL 222

Query: 374 VDMYAKCGYIFEATKLFNKMRERNTVTWNSMIFGFANHGYCNEAL 508
           VDMYAKCG+I EA+ LF  M ERNTVTWNSMIFG+ANHGYC+EA+
Sbjct: 223 VDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYCDEAI 267



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 34/94 (36%), Positives = 58/94 (61%)
 Frame = +2

Query: 221 MMGAGVWPTSFTISSLLPACATVADLKHGKEIHCYALVTGVEVDIFVCSTLVDMYAKCGY 400
           M   G+    F I S+L  C  V D++ G+ +H   L   +E D++V S+L+DMY+KCG 
Sbjct: 1   MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60

Query: 401 IFEATKLFNKMRERNTVTWNSMIFGFANHGYCNE 502
           + +A ++F++M E++ V  N+M+ G+  HG+  E
Sbjct: 61  VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKE 94