BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038628
         (414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]    59   4e-07
ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containi...    57   1e-06
ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat...    57   2e-06
ref|XP_003595769.1| Pentatricopeptide repeat-containing protein ...    56   3e-06

>emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
          Length = 633

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/50 (52%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = +2

Query: 266 FMEL-REVFDEMSQRTVAAWNTVIAVYDRVNDFESANLLFKLSPEKNVVS 412
           F++L R VFDEM+++T+ +WN +I+ YD++NDF+SA+ L    P KNVVS
Sbjct: 169 FLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVS 218


>ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/50 (52%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = +2

Query: 266 FMEL-REVFDEMSQRTVAAWNTVIAVYDRVNDFESANLLFKLSPEKNVVS 412
           F++L R VFDEM+++T+ +WN +I+ YD++NDF+SA+ L    P KNVVS
Sbjct: 275 FLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVS 324


>ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
 Frame = +2

Query: 104 KEVKKALDRCGVILNENFVIEVLEWHRSDWKSALRYLSWVSK---GERKNGIVLDQV--- 265
           +++ +ALD+CG  LN + V++VL  HRSDW+ A  + +W SK   G + +  V +++   
Sbjct: 52  EQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNWASKTTTGYQPSSDVCNEIVDI 111

Query: 266 ------FMELREVFDEMSQR 307
                 F EL +V DEMS+R
Sbjct: 112 LGKMQRFQELHQVLDEMSKR 131


>ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484817|gb|AES66020.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 497

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
 Frame = +2

Query: 11  NTSKFILIHRKMTHIRVTRHGPFHITTNNSVKEVKKALDRCGVILNENFVIEVLEWHRSD 190
           ++S+F+  H     +            +   +++++AL+  G+  N N V++VL+ HRSD
Sbjct: 51  SSSRFLHSHHDSPPLASFIQNLLKFRRDKPTEQIEQALNLIGIHPNNNLVLQVLQRHRSD 110

Query: 191 WKSALRYLSWVSK-----------GERKNGIVLDQVFMELREVFDEMSQR 307
           WK A  +  WVSK            E  N +   + F EL +V DEMSQR
Sbjct: 111 WKPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQVLDEMSQR 160