BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038519
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]   145   4e-33
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi...   130   9e-29
ref|NP_201359.1| pentatricopeptide repeat-containing protein [Ar...   106   2e-21
ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20

>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
           protein product [Vitis vinifera]
          Length = 890

 Score =  145 bits (365), Expect = 4e-33
 Identities = 74/125 (59%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +3

Query: 3   NWQKSPSFQKLTSSLTLYHVSQLLNLNIDPKTALAFFNWLGNRHGYSHDVKSYLSLLNLL 182
           NWQK PS +KL  SLT  HVS L   N+DP+TAL+FFNW+  R G+ H+V SY S+LN+L
Sbjct: 52  NWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNIL 111

Query: 183 IRARFLYIAENVRLSMIKSCKSMEDCNYVLTELRKLTS-GECGFKFTLKCYNYILISLSR 359
           IRAR L +AE +R+SMIKSC S+ED  +VL   RK+ + GE  FK TL+CYN IL+SLS+
Sbjct: 112 IRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSK 171

Query: 360 VLLID 374
            LLID
Sbjct: 172 FLLID 176


>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  145 bits (365), Expect = 4e-33
 Identities = 74/125 (59%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +3

Query: 3   NWQKSPSFQKLTSSLTLYHVSQLLNLNIDPKTALAFFNWLGNRHGYSHDVKSYLSLLNLL 182
           NWQK PS +KL  SLT  HVS L   N+DP+TAL+FFNW+  R G+ H+V SY S+LN+L
Sbjct: 52  NWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNIL 111

Query: 183 IRARFLYIAENVRLSMIKSCKSMEDCNYVLTELRKLTS-GECGFKFTLKCYNYILISLSR 359
           IRAR L +AE +R+SMIKSC S+ED  +VL   RK+ + GE  FK TL+CYN IL+SLS+
Sbjct: 112 IRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSK 171

Query: 360 VLLID 374
            LLID
Sbjct: 172 FLLID 176


>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
           gi|449522905|ref|XP_004168466.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  130 bits (328), Expect = 9e-29
 Identities = 64/126 (50%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
 Frame = +3

Query: 3   NWQKSPSFQKLTSSLTLYHVSQLLNLNIDPKTALAFFNWLGNRHGYSHDVKSYLSLLNLL 182
           NWQK PS + L  S+   H+S L  LN+DP+TALAFFNW+G +HG+ H+V+S++S+LN+L
Sbjct: 61  NWQKHPSLKNLIPSIAPSHISALFALNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNIL 120

Query: 183 IRARFLYIAENVRLSMIKSCKSMEDCNYVLTELRKLTSGECGFKF--TLKCYNYILISLS 356
           +   +L IAEN+R+ MIKS  S E+  +VL  LR +      FKF  TL+CYN +L+ LS
Sbjct: 121 VPNGYLRIAENMRILMIKSTDSSENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLS 180

Query: 357 RVLLID 374
           R L+ID
Sbjct: 181 RFLMID 186


>ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|110737310|dbj|BAF00601.1| hypothetical protein
           [Arabidopsis thaliana] gi|332010688|gb|AED98071.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 915

 Score =  106 bits (265), Expect = 2e-21
 Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
 Frame = +3

Query: 3   NWQKSPSFQKLTSSLTLYHVSQLLNLNIDPKTALAFFNWLGNRHGYSHDVKSYLSLLNLL 182
           NW KSPS + + S+++  HVS L +L++DPKTAL F +W+     Y H V SY SLL LL
Sbjct: 74  NWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLL 133

Query: 183 IRARFLYIAENVRLSMIKSCKSMEDCNYVLTELRKLTSG---ECGFKFTLKCYNYILISL 353
           I   ++ +   +RL MIKSC S+ D  YVL   RK+      E  +K  + CYN +L SL
Sbjct: 134 INNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSL 193

Query: 354 SRVLLID 374
           +R  L+D
Sbjct: 194 ARFGLVD 200


>ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  102 bits (254), Expect = 3e-20
 Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
 Frame = +3

Query: 6   WQKSPSFQKLTSSLTLYHVSQLLNLNIDPKTALAFFNWLGNRHGYSHDVKSYLSLLNLLI 185
           W+K PS + L  SLT   +  L NLN DP TAL FF W+   H + H + ++ SLL LL+
Sbjct: 38  WRKDPSLKTLIPSLTPSLLCSLFNLNPDPLTALNFFRWIRRHHNFPHSLATHHSLLLLLV 97

Query: 186 RARFLYIAENVRLSMIKSCKSMEDCNYVLTELRKLTSG--------ECGFKFTLKCYNYI 341
           R R L  AENVR SMIKSC S  D  ++L  LR++ +         +  FK +L  YN +
Sbjct: 98  RHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRL 157

Query: 342 LISLSRVLLID 374
           L+ LSR  ++D
Sbjct: 158 LMCLSRFSMVD 168