BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038479
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    82   3e-14
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    80   2e-13
ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [S...    79   3e-13
ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [S...    79   4e-13
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    77   1e-12

>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
 Frame = +3

Query: 3    STSLPKQFKFHHMWIDHPEYPNIITDSWNRVRLHHPTPSHLIFGKHISSVKKALRCWNKT 182
            S  L + F+F   W+ H  + +++  SWN       TP  L      +++K  L+ WN+ 
Sbjct: 650  SNPLRRPFRFEAAWLTHSGFKDLLQASWNT---EGETPVAL------AALKSKLKKWNRE 700

Query: 183  SFGNIFQHISFLKKTIACIQTR---SPTKENVALEHKVVRXXXXXXXXXXKLWKQKSRDK 353
             FG++ +    L   I  +Q     + T   ++ E ++++           LW QKSR+K
Sbjct: 701  VFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREK 760

Query: 354  DVIEGDRNTHYFHIKTLRHRKYNKIECLKDSKGTWFTSHKDIGNIVVTH 500
             V  GDRNT YFH  T+  R+ N+IE LK   G+W +  +++  + V +
Sbjct: 761  WVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDY 809


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
 Frame = +3

Query: 18  KQFKFHHMWIDHPEYPNIITDSWNRVRLHHPTPSHLIFGKHISSVKKALRCWNKTSFGNI 197
           K F+F   W++H  +   +  +WN      P          + S    L  WNK  F NI
Sbjct: 244 KPFRFQAAWLNHQVFCEFVRKNWNADAPIVP---------FLKSFADKLNKWNKEEFYNI 294

Query: 198 FQHISFLKKTIACIQTRSPT-KEN--VALEHKVVRXXXXXXXXXXKLWKQKSRDKDVIEG 368
           F+  S L   I+ +Q    T ++N  + LE K+ R           LW QKSR + + +G
Sbjct: 295 FRKKSELWARISGVQALLSTGRQNHLIKLEAKLRREMDIVLDDEETLWFQKSRMEAICDG 354

Query: 369 DRNTHYFHIKTLRHRKYNKIECLKDSKGTWFTSHKDIGNIVV 494
           DRNT YFH+ T+  R  N+I+ L+++ G W ++  ++  +V+
Sbjct: 355 DRNTRYFHLSTVIRRSRNRIDMLQNNDGEWISNPMEVKAMVL 396


>ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [Sorghum bicolor]
           gi|241923030|gb|EER96174.1| hypothetical protein
           SORBIDRAFT_02g008045 [Sorghum bicolor]
          Length = 723

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/154 (29%), Positives = 73/154 (47%)
 Frame = +3

Query: 18  KQFKFHHMWIDHPEYPNIITDSWNRVRLHHPTPSHLIFGKHISSVKKALRCWNKTSFGNI 197
           +QF++  MW  H ++ N + DSW R        S L     +  V   L  W++T+FGN+
Sbjct: 543 RQFRYEQMWETHLDFSNTLADSWRR---DGEAISTLELKAKLKGVANHLVQWDRTTFGNV 599

Query: 198 FQHISFLKKTIACIQTRSPTKENVALEHKVVRXXXXXXXXXXKLWKQKSRDKDVIEGDRN 377
            + +  L K +  +Q           E KVV            +W+Q+SR   +  GDRN
Sbjct: 600 REELRRLHKELERMQQDPQRLGPSYAELKVVERIRELNHREELMWRQRSRVMWLAAGDRN 659

Query: 378 THYFHIKTLRHRKYNKIECLKDSKGTWFTSHKDI 479
           T +FH++  + RK N+I+ LK S G +     ++
Sbjct: 660 TRFFHLRASKRRKRNRIQRLKKSDGQFTEDESEL 693


>ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [Sorghum bicolor]
           gi|241936686|gb|EES09831.1| hypothetical protein
           SORBIDRAFT_05g019526 [Sorghum bicolor]
          Length = 1209

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 43/160 (26%), Positives = 79/160 (49%)
 Frame = +3

Query: 18  KQFKFHHMWIDHPEYPNIITDSWNRVRLHHPTPSHLIFGKHISSVKKALRCWNKTSFGNI 197
           +QF++  MW  H ++ N+I+ +W R      T +H +  K + SV   L  W   +FG +
Sbjct: 506 RQFRYETMWETHEDFANVISQTWQRGT--KATTAHELQSK-LRSVSCKLNHWEVRTFGQV 562

Query: 198 FQHISFLKKTIACIQTRSPTKENVALEHKVVRXXXXXXXXXXKLWKQKSRDKDVIEGDRN 377
            + +  L++ +  +Q     +    +E K+             +WKQ++R + +  GD+N
Sbjct: 563 SRELKGLRRELEMMQADVNRQGPSHVELKIKERIMELNHREELMWKQRARIQWLSAGDKN 622

Query: 378 THYFHIKTLRHRKYNKIECLKDSKGTWFTSHKDIGNIVVT 497
           TH+FH++  R RK N I  LK + G      K++G +  +
Sbjct: 623 THFFHLRASRRRKRNMIVKLKTANGQVTEDRKEMGQMATS 662


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
 Frame = +3

Query: 15  PKQFKFHHMWIDHPEYPNIITDSWNRVRLHHPTPSHLIFGKHISSVKKALRCWNKTSFGN 194
           P+ F+F   WIDH +Y N++  SW+    H+PT S       +  V +    +N   FGN
Sbjct: 239 PRPFRFEAAWIDHYDYGNVVKRSWS-THTHNPTAS-------LIKVMENSIIFNHDVFGN 290

Query: 195 IFQHISFLKKTIACIQT---RSPTKENVALEHKVVRXXXXXXXXXXKLWKQKSRDKDVIE 365
           IFQ  S ++  +  +Q+   R  +  +  LE ++             LW QKSR++ V  
Sbjct: 291 IFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKL 350

Query: 366 GDRNTHYFHIKTLRHRKYNKIECLKDSKG 452
           GD+NT +FH +T+  RK+NKI  L+   G
Sbjct: 351 GDKNTAFFHAQTVIRRKWNKIHKLQLPNG 379