BLASTX nr result

ID: Coptis23_contig00038470 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038470
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18111.3| unnamed protein product [Vitis vinifera]              258   7e-67
ref|XP_002264195.1| PREDICTED: uncharacterized protein LOC100261...   257   9e-67
ref|XP_002323025.1| predicted protein [Populus trichocarpa] gi|2...   249   3e-64
ref|XP_003522048.1| PREDICTED: uncharacterized protein LOC100789...   241   8e-62
emb|CAN60253.1| hypothetical protein VITISV_026158 [Vitis vinifera]   237   9e-61

>emb|CBI18111.3| unnamed protein product [Vitis vinifera]
          Length = 431

 Score =  258 bits (658), Expect = 7e-67
 Identities = 127/187 (67%), Positives = 147/187 (78%), Gaps = 8/187 (4%)
 Frame = -2

Query: 539 VCMGKKHYMVVIRTWGLRSLFHALIPILVVGLVFATVCITQKNGRILEEELMLSSNC--- 369
           V M +K +MV   TWG+R  FH+L+ +LV  LV A V +T + GR LE+   +  NC   
Sbjct: 22  VNMAQKLHMVA-GTWGVRCSFHSLMGLLVATLVVAAVYLTGEGGRWLEDRKSICQNCGES 80

Query: 368 -----NVFDGKWVFNNVSYPLYSEKQCTYMSDQLACEKFGRKDLSYQNLRWQPNHCDLPR 204
                N+F GKWVF+N S+PLY EKQCT+MSDQLACEKFGR+DLSYQN RWQP+ CDLPR
Sbjct: 81  SCSGCNLFSGKWVFDNRSHPLYKEKQCTFMSDQLACEKFGRQDLSYQNWRWQPHQCDLPR 140

Query: 203 FNATALLDMLRGKRLVFIGDSLNRGQWVSMVCLVESVIPPALKSMHNNGSLITFKATEYN 24
           FNATALL+ LRGKRLVF+GDSLNRGQWVSMVCLV+S IPP LKSMH NGSL TFKATEYN
Sbjct: 141 FNATALLERLRGKRLVFVGDSLNRGQWVSMVCLVDSSIPPNLKSMHTNGSLTTFKATEYN 200

Query: 23  ASIEFYW 3
           A+IEFYW
Sbjct: 201 ATIEFYW 207


>ref|XP_002264195.1| PREDICTED: uncharacterized protein LOC100261884 [Vitis vinifera]
          Length = 408

 Score =  257 bits (657), Expect = 9e-67
 Identities = 126/185 (68%), Positives = 146/185 (78%), Gaps = 8/185 (4%)
 Frame = -2

Query: 533 MGKKHYMVVIRTWGLRSLFHALIPILVVGLVFATVCITQKNGRILEEELMLSSNC----- 369
           M +K +MV   TWG+R  FH+L+ +LV  LV A V +T + GR LE+   +  NC     
Sbjct: 1   MAQKLHMVA-GTWGVRCSFHSLMGLLVATLVVAAVYLTGEGGRWLEDRKSICQNCGESSC 59

Query: 368 ---NVFDGKWVFNNVSYPLYSEKQCTYMSDQLACEKFGRKDLSYQNLRWQPNHCDLPRFN 198
              N+F GKWVF+N S+PLY EKQCT+MSDQLACEKFGR+DLSYQN RWQP+ CDLPRFN
Sbjct: 60  SGCNLFSGKWVFDNRSHPLYKEKQCTFMSDQLACEKFGRQDLSYQNWRWQPHQCDLPRFN 119

Query: 197 ATALLDMLRGKRLVFIGDSLNRGQWVSMVCLVESVIPPALKSMHNNGSLITFKATEYNAS 18
           ATALL+ LRGKRLVF+GDSLNRGQWVSMVCLV+S IPP LKSMH NGSL TFKATEYNA+
Sbjct: 120 ATALLERLRGKRLVFVGDSLNRGQWVSMVCLVDSSIPPNLKSMHTNGSLTTFKATEYNAT 179

Query: 17  IEFYW 3
           IEFYW
Sbjct: 180 IEFYW 184


>ref|XP_002323025.1| predicted protein [Populus trichocarpa] gi|222867655|gb|EEF04786.1|
           predicted protein [Populus trichocarpa]
          Length = 402

 Score =  249 bits (635), Expect = 3e-64
 Identities = 118/178 (66%), Positives = 143/178 (80%), Gaps = 8/178 (4%)
 Frame = -2

Query: 512 VVIRTWGLRSLFHALIPILVVGLVFATVCITQKNGRILEEELM------LSSNCNVFDGK 351
           +V  TWG+RS FH+LI +LV  LV A++ +TQ +G ++E+         L S CN+F GK
Sbjct: 1   MVPATWGIRSSFHSLIALLVAFLVIASIYVTQNSGVLVEDRTKSKSSGDLLSRCNLFSGK 60

Query: 350 WVFNNVSYPLYSEKQCTYMSDQLACEKFGRKDLSYQNLRWQPNHCDLPRFNATALLDMLR 171
           WVF+N SYPLY EK+CT+MSDQLACEKFGRKDL+YQN RWQP+ CDLPRFNAT LL+ LR
Sbjct: 61  WVFDNKSYPLYKEKECTFMSDQLACEKFGRKDLNYQNWRWQPHQCDLPRFNATVLLERLR 120

Query: 170 GKRLVFIGDSLNRGQWVSMVCLVESVIPPALKSMH--NNGSLITFKATEYNASIEFYW 3
            +RL+F+GDSLNRGQWVSMVCLV+SVIPP L+SMH   NGSL  +KATEYNA+IEFYW
Sbjct: 121 NRRLMFVGDSLNRGQWVSMVCLVDSVIPPGLQSMHQYRNGSLHIYKATEYNATIEFYW 178


>ref|XP_003522048.1| PREDICTED: uncharacterized protein LOC100789678 [Glycine max]
          Length = 411

 Score =  241 bits (614), Expect = 8e-62
 Identities = 117/181 (64%), Positives = 138/181 (76%), Gaps = 4/181 (2%)
 Frame = -2

Query: 533 MGKKHYMVVIRTWGLRSLFHALIPILVVGLVFATVCITQKNGRILEEELMLSS--NCNVF 360
           M K H +V+   WG+R++F +L+ IL   LV A + +TQ+  +   E   L S   CN+F
Sbjct: 1   MAKAHQIVLGSNWGIRNIFQSLVAILTTILVVAAIYLTQEGEQWSNERNKLHSLSKCNLF 60

Query: 359 DGKWVFNNVSYPLYSEKQCTYMSDQLACEKFGRKDLSYQNLRWQPNHCDLPRFNATALLD 180
            GKWVF+N SYPLY E QCT+MSDQLACEKFGRKDLSYQN RW+P+ CDLPRFNATALL+
Sbjct: 61  SGKWVFDNESYPLYKEHQCTFMSDQLACEKFGRKDLSYQNWRWKPHQCDLPRFNATALLE 120

Query: 179 MLRGKRLVFIGDSLNRGQWVSMVCLVESVIPPALKSMHN--NGSLITFKATEYNASIEFY 6
            LR KR+VF+GDSLNRGQWVSMVCLVES +PP LKSM    NGSL  FKA EYNA+IEFY
Sbjct: 121 RLRNKRMVFVGDSLNRGQWVSMVCLVESSVPPTLKSMRTIANGSLNIFKAEEYNATIEFY 180

Query: 5   W 3
           W
Sbjct: 181 W 181


>emb|CAN60253.1| hypothetical protein VITISV_026158 [Vitis vinifera]
          Length = 387

 Score =  237 bits (605), Expect = 9e-61
 Identities = 115/161 (71%), Positives = 129/161 (80%), Gaps = 8/161 (4%)
 Frame = -2

Query: 461 ILVVGLVFATVCITQKNGRILEEELMLSSNC--------NVFDGKWVFNNVSYPLYSEKQ 306
           +LV  LV A V  T + GR LE+   +  NC        N+F GKWVF+N S+PLY EKQ
Sbjct: 3   LLVATLVVAAVYXTGEXGRWLEDRKSICQNCGESSCSGCNLFSGKWVFDNRSHPLYKEKQ 62

Query: 305 CTYMSDQLACEKFGRKDLSYQNLRWQPNHCDLPRFNATALLDMLRGKRLVFIGDSLNRGQ 126
           CT+MSDQLACEKFGR+DLSYQN RWQP+ CDLPRFNATALL+ LRGKRLVF+GDSLNRGQ
Sbjct: 63  CTFMSDQLACEKFGRQDLSYQNWRWQPHQCDLPRFNATALLERLRGKRLVFVGDSLNRGQ 122

Query: 125 WVSMVCLVESVIPPALKSMHNNGSLITFKATEYNASIEFYW 3
           WVSMVCLV+S IPP LKSMH NGSL TFKATEYNA+IEFYW
Sbjct: 123 WVSMVCLVDSSIPPNLKSMHTNGSLTTFKATEYNATIEFYW 163


Top