BLASTX nr result
ID: Coptis23_contig00038435
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00038435
(940 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi... 284 1e-91
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-lik... 270 6e-86
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ... 254 2e-84
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin... 263 3e-83
ref|XP_002331109.1| predicted protein [Populus trichocarpa] gi|2... 254 5e-81
>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
gi|297739525|emb|CBI29707.3| unnamed protein product
[Vitis vinifera]
Length = 380
Score = 284 bits (726), Expect(2) = 1e-91
Identities = 144/200 (72%), Positives = 158/200 (79%), Gaps = 12/200 (6%)
Frame = +2
Query: 128 RRYFYRLLSGPEPLSTFEKDRAWHVPEDLDFLAMQKACRVLIGCHDFSSFRAAGCQANSP 307
R YFYRLLSGPEPLS+FEKDRAWHVPEDLD LAMQKACRVL+GCHDFSSFRAAGCQA SP
Sbjct: 182 RTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSP 241
Query: 308 IRTLDELNVSEVVSAPYFPSITERGQAISSEQ------------DQPKFSYSYVTEGLRT 451
IRTLDEL VSEV+ PYFPSITER Q +E+ D P + +G
Sbjct: 242 IRTLDELCVSEVLPTPYFPSITERAQNNFTEENPLACSNNAEVPDSPSTANHDRLDGF-N 300
Query: 452 SGGNEFGQRKRLRCFVITARARSFLYHQVRLLVGVLKCVGTGDLTTNDVEGILNAKTITA 631
G FG R+R RCF++TARARSFLYHQVRLLVGV+KCVGTGDLT +DVE ILNAKT+TA
Sbjct: 301 GAGQGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTA 360
Query: 632 ASPMAPACGLYLGNVKYELP 691
ASPMAPACGLYLGNV Y+LP
Sbjct: 361 ASPMAPACGLYLGNVNYDLP 380
Score = 79.7 bits (195), Expect(2) = 1e-91
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +1
Query: 1 HEPEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKAQERT 129
HEP VVR+AVNHFL KNEGDVMV DVRCVP DFHAR+KA+ERT
Sbjct: 141 HEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERT 183
>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
Length = 369
Score = 270 bits (689), Expect(2) = 6e-86
Identities = 135/199 (67%), Positives = 157/199 (78%), Gaps = 11/199 (5%)
Frame = +2
Query: 128 RRYFYRLLSGPEPLSTFEKDRAWHVPEDLDFLAMQKACRVLIGCHDFSSFRAAGCQANSP 307
R YFYRLLSGPEPLSTFEKDRAWHVPE+L AMQ+ACRVL+GCHDFSSFRAAGCQA SP
Sbjct: 169 RTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSP 228
Query: 308 IRTLDELNVSEVVSAPYFPSITERGQ-----------AISSEQDQPKFSYSYVTEGLRTS 454
IRTLDEL+V+EV+ +PYFPS+ +R Q + ++E D P S + + + +S
Sbjct: 229 IRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNPSIDKVITSS 288
Query: 455 GGNEFGQRKRLRCFVITARARSFLYHQVRLLVGVLKCVGTGDLTTNDVEGILNAKTITAA 634
FG+R+R RC V+TARARSFLYHQVRLLVGVLK GTG+LT DVE ILNAKT+TAA
Sbjct: 289 QDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAA 348
Query: 635 SPMAPACGLYLGNVKYELP 691
SPMAPACGLYLG VKY+LP
Sbjct: 349 SPMAPACGLYLGEVKYDLP 367
Score = 75.1 bits (183), Expect(2) = 6e-86
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +1
Query: 1 HEPEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKAQERT 129
HEP VV +AVNHFL K++ D+MV DVRCVPSDFHARFKAQERT
Sbjct: 128 HEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERT 170
>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
putative [Ricinus communis]
Length = 372
Score = 254 bits (648), Expect(2) = 2e-84
Identities = 134/199 (67%), Positives = 154/199 (77%), Gaps = 11/199 (5%)
Frame = +2
Query: 128 RRYFYRLLSGPEPLSTFEKDRAWHVPEDLDFLAMQKACRVLIGCHDFSSFRAAGCQANSP 307
R YFYR LSGPEPLSTFEKDRAWHV EDLD +AMQ+AC+VL+G HDFSSFRA+GCQA SP
Sbjct: 174 RTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSP 233
Query: 308 IRTLDELNVSEVVSAPYFPSITERGQAISS---------EQDQPKFSYSYVTEGLRTSGG 460
IRTL E++VSEV S YFPSITER Q + + D P S+S + G
Sbjct: 234 IRTLAEISVSEVASTLYFPSITEREQNCENGENSCCKKFKTDLPMGSHSNTNVAESSFGE 293
Query: 461 NE--FGQRKRLRCFVITARARSFLYHQVRLLVGVLKCVGTGDLTTNDVEGILNAKTITAA 634
+ FG R+R RCFV+TARARSFLYHQVRLLVGVLK VG GDLTT+DVE IL+AK++TAA
Sbjct: 294 TDLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAA 353
Query: 635 SPMAPACGLYLGNVKYELP 691
SPMAPA GLYLG+VKY+LP
Sbjct: 354 SPMAPARGLYLGHVKYDLP 372
Score = 86.3 bits (212), Expect(2) = 2e-84
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +1
Query: 1 HEPEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKAQERT 129
HEP VVR+AVNHFL KNEGD+MVTDVRCVPSDFHARFKAQERT
Sbjct: 133 HEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERT 175
>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
gi|255637177|gb|ACU18919.1| unknown [Glycine max]
Length = 370
Score = 263 bits (672), Expect(2) = 3e-83
Identities = 134/199 (67%), Positives = 156/199 (78%), Gaps = 11/199 (5%)
Frame = +2
Query: 128 RRYFYRLLSGPEPLSTFEKDRAWHVPEDLDFLAMQKACRVLIGCHDFSSFRAAGCQANSP 307
R YFYRLLSGPEPLSTFEKDRAWHVPE+L AMQ+ACRVL+G HDFSSFRAAGCQA SP
Sbjct: 170 RIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSP 229
Query: 308 IRTLDELNVSEVVSAPYFPSITERGQ-----------AISSEQDQPKFSYSYVTEGLRTS 454
IRTLDEL+V+EV+ +PYFPS+ +R Q +SE D P S + + + +S
Sbjct: 230 IRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASS 289
Query: 455 GGNEFGQRKRLRCFVITARARSFLYHQVRLLVGVLKCVGTGDLTTNDVEGILNAKTITAA 634
FG+R+R RC V+TARAR+FLYHQVRLLVGVLK VGTG+LT DVE ILNA+T+TAA
Sbjct: 290 QDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAA 349
Query: 635 SPMAPACGLYLGNVKYELP 691
SPMAPACGLYLG VKY+LP
Sbjct: 350 SPMAPACGLYLGEVKYDLP 368
Score = 72.8 bits (177), Expect(2) = 3e-83
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +1
Query: 1 HEPEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKAQER 126
HEP VV +AVNHFL K + D+MV DVRCVPSDFHARFKAQER
Sbjct: 129 HEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQER 170
>ref|XP_002331109.1| predicted protein [Populus trichocarpa] gi|222872837|gb|EEF09968.1|
predicted protein [Populus trichocarpa]
Length = 326
Score = 254 bits (649), Expect(2) = 5e-81
Identities = 132/199 (66%), Positives = 152/199 (76%), Gaps = 13/199 (6%)
Frame = +2
Query: 128 RRYFYRLLSGPEPLSTFEKDRAWHVPEDLDFLAMQKACRVLIGCHDFSSFRAAGCQANSP 307
R YFYRLL GPE LSTFEKDRAWHV E+LD ++MQ+AC+VL+G HDFSSFRA+GCQA SP
Sbjct: 126 RTYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSP 185
Query: 308 IRTLDELNVSEVVSAPYFPSITERGQAISSEQDQPKF--------SYSYVTEGLRTSGGN 463
RTL+EL+V EVVS PYFPSITER Q S+ + F ++ G G N
Sbjct: 186 FRTLEELSVLEVVSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFMAGGSN 245
Query: 464 E-----FGQRKRLRCFVITARARSFLYHQVRLLVGVLKCVGTGDLTTNDVEGILNAKTIT 628
FG R+R RC+VITAR+RSFLYHQVRLLVGVLK VGTGDLT +DVE ILNA++IT
Sbjct: 246 SGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSIT 305
Query: 629 AASPMAPACGLYLGNVKYE 685
AASPMAPACGLYLG+VKYE
Sbjct: 306 AASPMAPACGLYLGHVKYE 324
Score = 74.3 bits (181), Expect(2) = 5e-81
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 1 HEPEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKAQERT 129
HEP VVRKAVNHFL K EGD+MVTDVR V + FHARFKAQERT
Sbjct: 85 HEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFKAQERT 127