BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038413
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-a...    65   8e-09
ref|XP_002535194.1| helicase, putative [Ricinus communis] gi|223...    64   1e-08
emb|CBI32804.3| unnamed protein product [Vitis vinifera]               60   1e-07
ref|XP_002308876.1| chromatin remodeling complex subunit [Populu...    60   2e-07
gb|AAM13184.1| helicase-like transcription factor-like protein [...    59   4e-07

>ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 1-like [Vitis vinifera]
          Length = 874

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = +2

Query: 53  EDPVNLYLNLDQWSH---GQXXXXXXXXXXXXXXXXFFLVGFVVVRIVGLQHYSGRITGR 223
           EDPV+L+++LD W                        +LVGFV+V IVG+Q+YSG I+GR
Sbjct: 4   EDPVSLFMSLDHWREFPIDADDDEDSSQCPLSSPSETYLVGFVIVNIVGIQYYSGTISGR 63

Query: 224 EMIGLVREPLN 256
           E +GLVREPLN
Sbjct: 64  ERVGLVREPLN 74


>ref|XP_002535194.1| helicase, putative [Ricinus communis] gi|223523786|gb|EEF27189.1|
           helicase, putative [Ricinus communis]
          Length = 518

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/68 (47%), Positives = 42/68 (61%)
 Frame = +2

Query: 53  EDPVNLYLNLDQWSHGQXXXXXXXXXXXXXXXXFFLVGFVVVRIVGLQHYSGRITGREMI 232
           +DPV L+++LD W                     FLVGFV+  IVG+++YSG ITGRE++
Sbjct: 7   QDPVALFMSLDDWQEDLSSQSLSET---------FLVGFVIANIVGVRYYSGTITGRELV 57

Query: 233 GLVREPLN 256
           GLVREPLN
Sbjct: 58  GLVREPLN 65


>emb|CBI32804.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +2

Query: 59  PVNLYLNLDQWSH---GQXXXXXXXXXXXXXXXXFFLVGFVVVRIVGLQHYSGRITGREM 229
           PV+L+++LD W                        +LVGFV+V IVG+Q+YSG I+GRE 
Sbjct: 19  PVSLFMSLDHWREFPIDADDDEDSSQCPLSSPSETYLVGFVIVNIVGIQYYSGTISGRER 78

Query: 230 IGLVREPLN 256
           +GLVREPLN
Sbjct: 79  VGLVREPLN 87


>ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222854852|gb|EEE92399.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 799

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +2

Query: 155 FLVGFVVVRIVGLQHYSGRITGREMIGLVREPLN 256
           F+VGFV+  IVGLQ+YSG ITGRE++GLVREPLN
Sbjct: 8   FMVGFVIANIVGLQYYSGTITGRELVGLVREPLN 41


>gb|AAM13184.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
          Length = 310

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +2

Query: 155 FLVGFVVVRIVGLQHYSGRITGREMIGLVREPLN 256
           +L+GFV+  IVGL++YSGRI GREM+GLVREPLN
Sbjct: 43  YLIGFVIANIVGLKYYSGRINGREMVGLVREPLN 76